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    ECB2 Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838121, updated on 18-Sep-2024

    Summary

    Official Symbol
    ECB2
    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT1G15510
    Locus tag
    AT1G15510
    See related
    Araport:AT1G15510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2; ATECB2; EARLY CHLOROPLAST BIOGENESIS2; T16N11.2; T16N11_2; VAC1; VANILLA CREAM 1
    Summary
    Encodes a pentatricopeptide repeat protein required for chloroplast transcript accD RNA editing and early chloroplast biogenesis.
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    Genomic context

    See ECB2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (5329064..5331711)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene TLC ATP/ADP transporter Neighboring gene pleiotropic drug resistance 12 Neighboring gene miscRNA

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    NM_101420.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding  
    Component Evidence Code Pubs
    located_in chloroplast PubMed 
    located_in mitochondrion  

    General protein information

    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_173004.1
    • EARLY CHLOROPLAST BIOGENESIS2 (ECB2); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 49765 Blast hits to 13993 proteins in 266 species: Archae - 0; Bacteria - 6; Metazoa - 64; Fungi - 140; Plants - 48782; Viruses - 0; Other Eukaryotes - 773 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5329064..5331711
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101420.2NP_173004.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173004.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      E2FJQ9, Q9M9E2
      UniProtKB/TrEMBL
      A0A5S9ULX7, A0A654EKX3, A0A7G2DQY5
      Conserved Domains (2) summary
      PLN03077
      Location:5866
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:565592
      PPR; PPR repeat [structural motif]
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