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ERF73 Integrase-type DNA-binding superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843568, updated on 18-Sep-2024

Summary

Official Symbol
ERF73
Official Full Name
Integrase-type DNA-binding superfamily protein
Primary source
TAIR:AT1G72360
Locus tag
AT1G72360
See related
Araport:AT1G72360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtERF73; ethylene response factor 73; HRE1; HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1; T10D10.17; T10D10_17
Summary
Encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
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Genomic context

See ERF73 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (27241696..27242968)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene alanine aminotransferase 2 Neighboring gene NagB/RpiA/CoA transferase-like superfamily protein Neighboring gene MADS-box transcription factor family protein Neighboring gene 40s ribosomal protein SA Neighboring gene nuclear receptor coactivator Neighboring gene COP1-interacting protein-like protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

General gene information

NM_001084343.2
NM_001124115.1
NM_105895.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in cellular response to anoxia PubMed 
acts_upstream_of_or_within cellular response to ethylene stimulus PubMed 
involved_in cellular response to ethylene stimulus PubMed 
acts_upstream_of_or_within cellular response to hypoxia PubMed 
involved_in cellular response to hypoxia PubMed 
involved_in ethylene-activated signaling pathway  
acts_upstream_of_or_within ethylene-activated signaling pathway PubMed 
acts_upstream_of_or_within ethylene-activated signaling pathway PubMed 
involved_in positive regulation of DNA-templated transcription PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription PubMed 
involved_in regulation of DNA-templated transcription  
acts_upstream_of_or_within response to anoxia PubMed 
acts_upstream_of_or_within response to ethylene PubMed 
acts_upstream_of_or_within response to hypoxia PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure PubMed 
located_in nucleus PubMed 
located_in nucleus  

General protein information

Preferred Names
Integrase-type DNA-binding superfamily protein
NP_001077812.1
  • HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 (HRE1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding protein (TAIR:AT3G16770.1); Has 6097 Blast hits to 5793 proteins in 253 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6054; Viruses - 2; Other Eukaryotes - 39 (source: NCBI BLink).
NP_001117587.1
  • HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 (HRE1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding protein (TAIR:AT3G16770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_177380.2
  • HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 (HRE1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G47520.1); Has 6115 Blast hits to 5780 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6076; Viruses - 2; Other Eukaryotes - 37 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27241696..27242968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084343.2NP_001077812.1  Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077812.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IDA7, Q8H0T5, Q9C9D5
    UniProtKB/TrEMBL
    A0A178W8F1
    Conserved Domains (1) summary
    smart00380
    Location:75138
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
  2. NM_001124115.1NP_001117587.1  Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117587.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3H5K8
    Conserved Domains (1) summary
    smart00380
    Location:73136
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
  3. NM_105895.2NP_177380.2  Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177380.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8H0T5
    Conserved Domains (1) summary
    smart00380
    Location:2487
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
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