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Pramel54 PRAME like 54 [ Mus musculus (house mouse) ]

Gene ID: 666209, updated on 9-Dec-2024

Summary

Official Symbol
Pramel54provided by MGI
Official Full Name
PRAME like 54provided by MGI
Primary source
MGI:MGI:3648891
See related
Ensembl:ENSMUSG00000072814 AllianceGenome:MGI:3648891
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm7982; EG666209
Summary
Predicted to enable ubiquitin-like ligase-substrate adaptor activity. Predicted to be part of Cul2-RING ubiquitin ligase complex. Orthologous to several human genes including PRAMEF1 (PRAME family member 1); PRAMEF10 (PRAME family member 10); and PRAMEF11 (PRAME family member 11). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Restricted expression toward testis adult (RPKM 1.4) See more
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Genomic context

See Pramel54 in Genome Data Viewer
Location:
5 E3; 5 47.29 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (95834265..95894674)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (95686406..95746662)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene PRAME like 49 Neighboring gene predicted gene 6348 Neighboring gene predicted gene 3302 Neighboring gene PRAME like 50 Neighboring gene PRAME like 55 Neighboring gene STARR-seq mESC enhancer starr_13672 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Component Evidence Code Pubs
part_of Cul2-RING ubiquitin ligase complex  
is_active_in cellular_component  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001406248.1NP_001393177.1  predicted gene 7982 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC148327, AC165367
    UniProtKB/TrEMBL
    A0A0J9YUM1, A0AAG1GHQ8, K9J7D1
    Related
    ENSMUSP00000114696.2, ENSMUST00000136313.3
  2. NM_001406249.1NP_001393178.1  predicted gene 7982 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC148327
    UniProtKB/TrEMBL
    A0A571BEB7
    Related
    ENSMUSP00000115998.2, ENSMUST00000154086.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    95834265..95894674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036165643.1XP_036021536.1  predicted gene 7982 isoform X1

    UniProtKB/TrEMBL
    A0A0J9YUM1, A0AAG1GHQ8
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