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spatacsin carboxy-terminus protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830097, updated on 18-Sep-2024

Summary

Official Full Name
spatacsin carboxy-terminus protein
Primary source
TAIR:AT4G39420
Locus tag
AT4G39420
See related
Araport:AT4G39420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F23K16.50; F23K16_50
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Genomic context

Location:
chromosome: 4
Exon count:
26
Sequence:
Chromosome: 4; NC_003075.7 (18339127..18355149)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene WRKY DNA-binding protein 13 Neighboring gene S-adenosylmethionine carrier 1 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

General gene information

NM_001342542.1
NM_120102.7

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in mitochondrion  
located_in plasma membrane PubMed 

General protein information

Preferred Names
spatacsin carboxy-terminus protein
NP_001154293.2
  • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 20 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_195652.5
  • unknown protein; Has 46 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    18339127..18355149
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001160821.3NP_001154293.2  spatacsin carboxy-terminus protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154293.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V4C4, F4JW20
    Conserved Domains (1) summary
    pfam14649
    Location:28013094
    Spatacsin_C; Spatacsin C-terminus
  2. NM_001342541.1NP_001328120.1  spatacsin carboxy-terminus protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B3P8
  3. NM_120102.7NP_195652.5  spatacsin carboxy-terminus protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195652.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JW21
    Conserved Domains (1) summary
    pfam14649
    Location:21302423
    Spatacsin_C; Spatacsin C-terminus
  4. NM_001342542.1NP_001328119.1  spatacsin carboxy-terminus protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V4C4, A0A1P8B3N6
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