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txndc5 thioredoxin domain containing 5 [ Danio rerio (zebrafish) ]

Gene ID: 406289, updated on 9-Dec-2024

Summary

Official Symbol
txndc5provided by ZNC
Official Full Name
thioredoxin domain containing 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1951
See related
Ensembl:ENSDARG00000009342 AllianceGenome:ZFIN:ZDB-GENE-040426-1951
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:66265; wu:fb20a07; wu:fb55b10
Summary
Predicted to enable protein disulfide isomerase activity. Predicted to be involved in protein folding. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Orthologous to human TXNDC5 (thioredoxin domain containing 5). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See txndc5 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (7941373..7957536, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (7912054..7928261, complement)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene zgc:101569 Neighboring gene bone morphogenetic protein 6 Neighboring gene biogenesis of lysosomal organelles complex-1, subunit 5, muted Neighboring gene orofacial cleft 1 candidate 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Clone Names

  • MGC66265

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in protein folding  
Component Evidence Code Pubs
is_active_in endoplasmic reticulum  
located_in endoplasmic reticulum lumen  

General protein information

Preferred Names
thioredoxin domain-containing protein 5
NP_998181.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213016.2NP_998181.2  thioredoxin domain-containing protein 5 precursor

    Status: VALIDATED

    Source sequence(s)
    CR376854
    UniProtKB/TrEMBL
    A0A8M2B9N7, F1R184, Q6PFL9
    Related
    ENSDARP00000116609.1, ENSDART00000145815.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    7941373..7957536 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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