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Tmem215 transmembrane protein 215 [ Rattus norvegicus (Norway rat) ]

Gene ID: 690918, updated on 9-Dec-2024

Summary

Official Symbol
Tmem215provided by RGD
Official Full Name
transmembrane protein 215provided by RGD
Primary source
RGD:1589861
See related
EnsemblRapid:ENSRNOG00000042246 AllianceGenome:RGD:1589861
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to act upstream of or within negative regulation of retinal cell programmed cell death and sprouting angiogenesis. Orthologous to human TMEM215 (transmembrane protein 215). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Brain (RPKM 15.4), Thymus (RPKM 9.6) and 5 other tissues See more
Orthologs
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Genomic context

See Tmem215 in Genome Data Viewer
Location:
5q22
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (60408587..60411841)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (55612568..55615828)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (56797502..56800759)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134478961 Neighboring gene Sec61 translocon subunit gamma, pseudogene 8 Neighboring gene SUMO-conjugating enzyme UBC9-like Neighboring gene ribosomal protein L24, pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109613.1NP_001103083.1  transmembrane protein 215

    See identical proteins and their annotated locations for NP_001103083.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473962
    UniProtKB/TrEMBL
    A6IIR5, D3ZI94
    Related
    ENSRNOP00000106196.1, ENSRNOT00000159113.1
    Conserved Domains (1) summary
    pfam15746
    Location:1235
    TMEM215; TMEM215 family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    60408587..60411841
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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