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    Snrnp27 small nuclear ribonucleoprotein 27 (U4/U6.U5) [ Mus musculus (house mouse) ]

    Gene ID: 66618, updated on 9-Dec-2024

    Summary

    Official Symbol
    Snrnp27provided by MGI
    Official Full Name
    small nuclear ribonucleoprotein 27 (U4/U6.U5)provided by MGI
    Primary source
    MGI:MGI:1913868
    See related
    Ensembl:ENSMUSG00000001158 AllianceGenome:MGI:1913868
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ry1; 2610209M04Rik
    Summary
    Predicted to be involved in RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex. Orthologous to human SNRNP27 (small nuclear ribonucleoprotein U4/U6.U5 subunit 27). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in CNS E11.5 (RPKM 21.9), bladder adult (RPKM 19.1) and 26 other tissues See more
    Orthologs
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    Genomic context

    See Snrnp27 in Genome Data Viewer
    Location:
    6 D1; 6 37.75 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (86652151..86661473, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (86675169..86684491, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene aspartic peptidase, retroviral-like 1 Neighboring gene MAX dimerization protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E860 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:86634487-86634670 Neighboring gene germ cell-less, spermatogenesis associated 1 Neighboring gene STARR-positive B cell enhancer ABC_E3661 Neighboring gene annexin A4

    Genomic regions, transcripts, and products

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from PubChem

    Interactions

    General gene information

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in RNA splicing  
    involved_in biological_process  
    involved_in mRNA processing  
    Component Evidence Code Pubs
    part_of U4/U6 x U5 tri-snRNP complex  
    located_in nucleus  

    General protein information

    Preferred Names
    U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein
    Names
    U4/U6.U5 snRNP 27 kDa protein
    U4/U6.U5 tri-snRNP-associated protein 3
    U4/U6.U5-27K
    putative nucleic acid binding protein RY-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025665.2NP_079941.1  U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein

      See identical proteins and their annotated locations for NP_079941.1

      Status: PROVISIONAL

      Source sequence(s)
      AK011937
      Consensus CDS
      CCDS20315.1
      UniProtKB/Swiss-Prot
      Q8BRA8, Q8K194, Q9CSV0
      Related
      ENSMUSP00000001186.5, ENSMUST00000001186.11
      Conserved Domains (1) summary
      pfam08648
      Location:98154
      DUF1777; Protein of unknown function (DUF1777)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      86652151..86661473 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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