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Leucine-rich repeat (LRR) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819770, updated on 18-Sep-2024

Summary

Official Full Name
Leucine-rich repeat (LRR) family protein
Primary source
TAIR:AT3G05990
Locus tag
AT3G05990
See related
Araport:AT3G05990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2O10.5; F2O10_5
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Genomic context

Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (1796839..1800082, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene RNI-like superfamily protein Neighboring gene SNF2/Brahma-type chromatin-remodeling protein CHR12

General gene information

NM_111473.5

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast  

General protein information

Preferred Names
Leucine-rich repeat (LRR) family protein
NP_187250.1
  • Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G19230.1); Has 48781 Blast hits to 12236 proteins in 453 species: Archae - 4; Bacteria - 457; Metazoa - 323; Fungi - 23; Plants - 45747; Viruses - 0; Other Eukaryotes - 2227 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    1796839..1800082 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111473.5NP_187250.1  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187250.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V9S5, A0A5S9X9I2, Q9SFG3
    Conserved Domains (5) summary
    cd00116
    Location:400489
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:410430
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08263
    Location:364400
    LRRNT_2; Leucine rich repeat N-terminal domain
    pfam12819
    Location:30352
    Malectin_like; Carbohydrate-binding protein of the ER
    pfam13855
    Location:431488
    LRR_8; Leucine rich repeat
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