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col-77 Nematode cuticle collagen N-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 174336, updated on 9-Dec-2024

Summary

Official Symbol
col-77
Official Full Name
Nematode cuticle collagen N-terminal domain-containing protein
Primary source
WormBase:WBGene00000653
Locus tag
CELE_M195.1
See related
AllianceGenome:WB:WBGene00000653
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Human ortholog(s) of this gene implicated in Bethlem myopathy and Ullrich congenital muscular dystrophy 1B. Orthologous to human COL6A2 (collagen type VI alpha 2 chain). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

See col-77 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003280.10 (8358228..8359381, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Protein kinase domain-containing protein Neighboring gene G protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Activated in Blocked Unfolded protein response;Cysteine rich repeat-containing domain protein Neighboring gene Putative ammonium transporter 3 Neighboring gene pseudo

Interactions

General gene information

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
part_of collagen trimer  
located_in membrane  

General protein information

Preferred Names
Nematode cuticle collagen N-terminal domain-containing protein
NP_495759.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    8358228..8359381 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_063358.5NP_495759.1  Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_495759.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q21562
    Conserved Domains (3) summary
    pfam01391
    Location:163220
    Collagen; Collagen triple helix repeat (20 copies)
    smart01088
    Location:1870
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain
    PRK07764
    Location:155302
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
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