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    Fam117b family with sequence similarity 117, member B [ Mus musculus (house mouse) ]

    Gene ID: 72750, updated on 9-Dec-2024

    Summary

    Official Symbol
    Fam117bprovided by MGI
    Official Full Name
    family with sequence similarity 117, member Bprovided by MGI
    Primary source
    MGI:MGI:1920000
    See related
    Ensembl:ENSMUSG00000041040 AllianceGenome:MGI:1920000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Als2cr13; 2810425F24Rik; 6330416D14Rik
    Summary
    Is expressed in cerebral cortex ventricular layer and cortical plate. Orthologous to human FAM117B (family with sequence similarity 117 member B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in whole brain E14.5 (RPKM 17.1), CNS E18 (RPKM 16.8) and 27 other tissues See more
    Orthologs
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    Genomic context

    See Fam117b in Genome Data Viewer
    Location:
    1 C2; 1 30.44 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (59952165..60024507)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (59913006..59985348)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA B430105G09 gene Neighboring gene bone morphogenetic protein receptor type 2 Neighboring gene STARR-seq mESC enhancer starr_01055 Neighboring gene STARR-positive B cell enhancer ABC_E5760 Neighboring gene arginyl-tRNA synthetase 2, mitochondrial pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr1:60073097-60073398 Neighboring gene islet cell autoantigen 1-like Neighboring gene STARR-seq mESC enhancer starr_01058 Neighboring gene STARR-seq mESC enhancer starr_01059 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:60154934-60155145 Neighboring gene WD repeat domain 12 Neighboring gene calcium response factor

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    General gene information

    Clone Names

    • MGC90831

    Gene Ontology Provided by MGI

    General protein information

    Preferred Names
    protein FAM117B
    Names
    amyotrophic lateral sclerosis 2 chromosomal region candidate gene 13 protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037725.3NP_001032814.1  protein FAM117B

      See identical proteins and their annotated locations for NP_001032814.1

      Status: VALIDATED

      Source sequence(s)
      AC125377, BC080299, BY455778
      Consensus CDS
      CCDS14986.1
      UniProtKB/Swiss-Prot
      Q3U3E2, Q68EE3
      Related
      ENSMUSP00000041671.6, ENSMUST00000036540.12
      Conserved Domains (1) summary
      pfam15388
      Location:217524
      FAM117; Protein Family FAM117

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      59952165..60024507
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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