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Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837138, updated on 18-Sep-2024

Summary

Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT1G06270
Locus tag
AT1G06270
See related
Araport:AT1G06270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9P14.13; F9P14_13
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Genomic context

Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (1917991..1919760, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene diiron containing four-helix bundle family ferritin protein, putative (Protein of unknown function DUF455) Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene Cysteine proteinases superfamily protein Neighboring gene LOB domain-containing protein 2 Neighboring gene acyl-CoA oxidase 3

Interactions

General gene information

NM_100509.5

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in mitochondrion  
located_in plastid membrane PubMed 

General protein information

Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_563765.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: rna processing factor 2 (TAIR:AT1G62670.1); Has 12812 Blast hits to 4675 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 12587; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1917991..1919760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100509.5NP_563765.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563765.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LNC0
    UniProtKB/TrEMBL
    A0A178WJX2, A0A654E8I6
    Conserved Domains (2) summary
    sd00004
    Location:171200
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:169217
    PPR_2; PPR repeat family
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