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cops7a COP9 constitutive photomorphogenic homolog subunit 7A [ Danio rerio (zebrafish) ]

Gene ID: 336736, updated on 9-Dec-2024

Summary

Official Symbol
cops7aprovided by ZNC
Official Full Name
COP9 constitutive photomorphogenic homolog subunit 7Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8680
See related
Ensembl:ENSDARG00000022788 AllianceGenome:ZFIN:ZDB-GENE-030131-8680
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fa19h06; wu:fa94b04
Summary
Predicted to act upstream of or within COP9 signalosome assembly. Predicted to be located in cytoplasm and nucleus. Predicted to be part of COP9 signalosome. Orthologous to several human genes including COPS7A (COP9 signalosome subunit 7A). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See cops7a in Genome Data Viewer
Location:
chromosome: 16
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (21751922..21777544, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (21947670..21973292, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 384 b Neighboring gene si:ch211-154o6.3 Neighboring gene si:ch211-154o6.4 Neighboring gene C-type lectin domain containing 1 Neighboring gene zinc-binding protein A33

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Interactions

General gene information

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
part_of COP9 signalosome  
part_of COP9 signalosome  
located_in cytoplasm  
located_in nucleus  

General protein information

Preferred Names
COP9 signalosome complex subunit 7a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001305596.1NP_001292525.1  COP9 signalosome complex subunit 7a

    Status: VALIDATED

    Source sequence(s)
    EH435068, EH448205
    UniProtKB/TrEMBL
    A0A8M1P1C6, F6PBL6
    Related
    ENSDARP00000029462.5, ENSDART00000039381.6
    Conserved Domains (1) summary
    smart00753
    Location:75164
    PAM; PCI/PINT associated module

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    21751922..21777544 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394960.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    132061..158625 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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