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NXPE3 neurexophilin and PC-esterase domain family member 3 [ Homo sapiens (human) ]

Gene ID: 91775, updated on 10-Dec-2024

Summary

Official Symbol
NXPE3provided by HGNC
Official Full Name
neurexophilin and PC-esterase domain family member 3provided by HGNC
Primary source
HGNC:HGNC:28238
See related
Ensembl:ENSG00000144815 AllianceGenome:HGNC:28238
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM55C; MST115; MSTP115
Summary
This gene encodes a member of the neurexophilin family of neuropeptide-like glycoproteins. The encoded protein contains a variable N-terminal domain, a highly conserved neurexophilin and PC-esterase (NXPE) central domain, a short linker region, and a cysteine-rich C-terminal domain. This protein binds alpha neurexins, a group of presynaptic transmembrane receptors that promote adhesion between dendrites and axons. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2017]
Expression
Ubiquitous expression in brain (RPKM 6.4), lymph node (RPKM 5.0) and 24 other tissues See more
Orthologs
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Genomic context

See NXPE3 in Genome Data Viewer
Location:
3q12.3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (101779211..101828231)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (104492001..104541024)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (101498055..101547075)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20176 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20177 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20178 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:101444325-101444936 Neighboring gene PDCL3 pseudogene 4 Neighboring gene centrosomal protein 97 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20179 Neighboring gene Sharpr-MPRA regulatory region 11 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20180 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14578 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20181 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20182 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20183 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20184 Neighboring gene Sharpr-MPRA regulatory region 1067 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20185 Neighboring gene Sharpr-MPRA regulatory region 7874 Neighboring gene NFKB inhibitor zeta Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20186 Neighboring gene MPRA-validated peak4754 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20187 Neighboring gene RIG-I dependent antiviral response regulator RNA Neighboring gene uncharacterized LOC101929411

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Interactions

General gene information

Clone Names

  • FLJ30102, MGC15606

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in extracellular region  

General protein information

Preferred Names
NXPE family member 3
Names
family with sequence similarity 55, member C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053180.2 RefSeqGene

    Range
    5027..54047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001134456.2NP_001127928.1  NXPE family member 3 isoform 1 precursor

    See identical proteins and their annotated locations for NP_001127928.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1). Variants 1-8 encode the same isoform (1).
    Source sequence(s)
    AC020651, AC084198
    Consensus CDS
    CCDS2945.1
    UniProtKB/Swiss-Prot
    A8K0X4, D3DN53, Q7Z2S8, Q969Y0
    UniProtKB/TrEMBL
    A0A994J553
    Related
    ENSP00000417485.1, ENST00000491511.6
    Conserved Domains (1) summary
    pfam06312
    Location:75284
    Neurexophilin
  2. NM_001348990.2NP_001335919.1  NXPE family member 3 isoform 1 precursor

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1-8 encode the same isoform (1).
    Source sequence(s)
    AC020651, AC084198
    Consensus CDS
    CCDS2945.1
    UniProtKB/Swiss-Prot
    A8K0X4, D3DN53, Q7Z2S8, Q969Y0
    UniProtKB/TrEMBL
    A0A994J553
    Conserved Domains (1) summary
    pfam06312
    Location:75284
    Neurexophilin
  3. NM_001348991.2NP_001335920.1  NXPE family member 3 isoform 1 precursor

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR, compared to variant 1. Variants 1-8 encode the same isoform (1).
    Source sequence(s)
    AC020651, AC084198
    Consensus CDS
    CCDS2945.1
    UniProtKB/Swiss-Prot
    A8K0X4, D3DN53, Q7Z2S8, Q969Y0
    UniProtKB/TrEMBL
    A0A994J553
    Related
    ENSP00000515931.1, ENST00000487830.2
    Conserved Domains (1) summary
    pfam06312
    Location:75284
    Neurexophilin
  4. NM_001348992.2NP_001335921.1  NXPE family member 3 isoform 1 precursor

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR, compared to variant 1. Variants 1-8 encode the same isoform (1).
    Source sequence(s)
    AC020651, AC084198
    Consensus CDS
    CCDS2945.1
    UniProtKB/Swiss-Prot
    A8K0X4, D3DN53, Q7Z2S8, Q969Y0
    UniProtKB/TrEMBL
    A0A994J553
    Related
    ENSP00000515920.1, ENST00000704532.1
    Conserved Domains (1) summary
    pfam06312
    Location:75284
    Neurexophilin
  5. NM_001348993.2NP_001335922.1  NXPE family member 3 isoform 1 precursor

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR, compared to variant 1. Variants 1-8 encode the same isoform (1).
    Source sequence(s)
    AC020651, AC084198
    Consensus CDS
    CCDS2945.1
    UniProtKB/Swiss-Prot
    A8K0X4, D3DN53, Q7Z2S8, Q969Y0
    UniProtKB/TrEMBL
    A0A994J553
    Related
    ENSP00000418381.2, ENST00000495842.6
    Conserved Domains (1) summary
    pfam06312
    Location:75284
    Neurexophilin
  6. NM_001348994.2NP_001335923.1  NXPE family member 3 isoform 1 precursor

    Status: REVIEWED

    Description
    Transcript Variant: This variant (7) differs in the 5' UTR, compared to variant 1. Variants 1-8 encode the same isoform (1).
    Source sequence(s)
    AC020651, AC084198
    Consensus CDS
    CCDS2945.1
    UniProtKB/Swiss-Prot
    A8K0X4, D3DN53, Q7Z2S8, Q969Y0
    UniProtKB/TrEMBL
    A0A994J553
    Related
    ENSP00000515927.1, ENST00000704539.1
    Conserved Domains (1) summary
    pfam06312
    Location:75284
    Neurexophilin
  7. NM_001348995.2NP_001335924.1  NXPE family member 3 isoform 1 precursor

    Status: REVIEWED

    Description
    Transcript Variant: This variant (8) differs in the 5' UTR, compared to variant 1. Variants 1-8 encode the same isoform (1).
    Source sequence(s)
    AC020651, AC084198
    Consensus CDS
    CCDS2945.1
    UniProtKB/Swiss-Prot
    A8K0X4, D3DN53, Q7Z2S8, Q969Y0
    UniProtKB/TrEMBL
    A0A994J553
    Related
    ENSP00000515919.1, ENST00000704530.1
    Conserved Domains (1) summary
    pfam06312
    Location:75284
    Neurexophilin
  8. NM_001348996.2NP_001335925.1  NXPE family member 3 isoform 2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (9) differs in the 5' UTR and lacks an alternate exon in the 3' coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1. Variants 9-11 encode the same isoform (2).
    Source sequence(s)
    AC020651, AC084198
    Consensus CDS
    CCDS93338.1
    UniProtKB/TrEMBL
    A0A994J553, A0A994J739
    Related
    ENSP00000515936.1, ENST00000704548.1
    Conserved Domains (1) summary
    pfam06312
    Location:75284
    Neurexophilin
  9. NM_001348997.2NP_001335926.1  NXPE family member 3 isoform 2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (10) differs in the 5' UTR and lacks an alternate exon in the 3' coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1. Variants 9-11 encode the same isoform (2).
    Source sequence(s)
    AC020651, AC084198
    Consensus CDS
    CCDS93338.1
    UniProtKB/TrEMBL
    A0A994J553, A0A994J739
    Related
    ENSP00000515917.1, ENST00000704528.1
    Conserved Domains (1) summary
    pfam06312
    Location:75284
    Neurexophilin
  10. NM_001348998.2NP_001335927.1  NXPE family member 3 isoform 2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (11) lacks an alternate exon in the 3' coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1. Variants 9-11 encode the same isoform (2).
    Source sequence(s)
    AC020651, AC084198
    Consensus CDS
    CCDS93338.1
    UniProtKB/TrEMBL
    A0A994J553, A0A994J739
    Related
    ENSP00000515937.1, ENST00000704549.1
    Conserved Domains (1) summary
    pfam06312
    Location:75284
    Neurexophilin
  11. NM_145037.4NP_659474.1  NXPE family member 3 isoform 1 precursor

    See identical proteins and their annotated locations for NP_659474.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1-8 encode the same isoform (1).
    Source sequence(s)
    AC020651, AC084198
    Consensus CDS
    CCDS2945.1
    UniProtKB/Swiss-Prot
    A8K0X4, D3DN53, Q7Z2S8, Q969Y0
    UniProtKB/TrEMBL
    A0A994J553
    Related
    ENSP00000273347.5, ENST00000273347.10
    Conserved Domains (1) summary
    pfam06312
    Location:75284
    Neurexophilin

RNA

  1. NR_145993.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (12) uses an alternate 5' exon structure and lacks an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC020651, AC084198

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    101779211..101828231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    104492001..104541024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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