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Ccdc120 coiled-coil domain containing 120 [ Mus musculus (house mouse) ]

Gene ID: 54648, updated on 9-Dec-2024

Summary

Official Symbol
Ccdc120provided by MGI
Official Full Name
coiled-coil domain containing 120provided by MGI
Primary source
MGI:MGI:1859619
See related
Ensembl:ENSMUSG00000031150 AllianceGenome:MGI:1859619
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Jm11; Sfc25; DXImx50e
Summary
Predicted to be involved in microtubule anchoring at centrosome and protein localization. Predicted to be located in centriole; endosome; and growth cone. Predicted to be part of centriolar subdistal appendage. Is expressed in several structures, including aorta; esophagus; exocrine gland; female reproductive system; and thymus. Orthologous to human CCDC120 (coiled-coil domain containing 120). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Ubiquitous expression in small intestine adult (RPKM 13.6), whole brain E14.5 (RPKM 11.7) and 23 other tissues See more
Orthologs
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Genomic context

See Ccdc120 in Genome Data Viewer
Location:
X A1.1; X 3.48 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (7597953..7607563, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (7731714..7741324, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_46668 Neighboring gene STARR-seq mESC enhancer starr_46669 Neighboring gene WD repeat domain 45 Neighboring gene PRA1 domain family 2 Neighboring gene SMT3 suppressor of mif two 3 homolog 2, pseudogene (S. cerevisiae) Neighboring gene STARR-seq mESC enhancer starr_46671 Neighboring gene STARR-seq mESC enhancer starr_46672 Neighboring gene transcription factor E3 Neighboring gene predicted gene, 39487

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Clone Names

  • MGC56838

Gene Ontology Provided by MGI

Component Evidence Code Pubs
part_of centriolar subdistal appendage  
located_in centriole  
located_in endosome  
located_in growth cone  

General protein information

Preferred Names
coiled-coil domain-containing protein 120

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207202.2NP_997085.2  coiled-coil domain-containing protein 120

    See identical proteins and their annotated locations for NP_997085.2

    Status: VALIDATED

    Source sequence(s)
    AL671995, BC053918, BU505792, BY023242
    Consensus CDS
    CCDS29972.1
    UniProtKB/Swiss-Prot
    A2AEV7, A2AEV8
    Related
    ENSMUSP00000033490.7, ENSMUST00000033490.13
    Conserved Domains (1) summary
    pfam11819
    Location:282
    DUF3338; Domain of unknown function (DUF3338)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    7597953..7607563 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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