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Arln allregulin [ Mus musculus (house mouse) ]

Gene ID: 67704, updated on 15-Dec-2024

Summary

Official Symbol
Arlnprovided by MGI
Official Full Name
allregulinprovided by MGI
Primary source
MGI:MGI:1914954
See related
Ensembl:ENSMUSG00000054091 AllianceGenome:MGI:1914954
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Aln; 1810037I17Rik; 5730414I01Rik
Summary
Acts upstream of or within negative regulation of ATPase-coupled calcium transmembrane transporter activity. Located in endoplasmic reticulum membrane. Is expressed in several structures, including brain and retina. Orthologous to human C4orf3 (chromosome 4 open reading frame 3). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Ubiquitous expression in stomach adult (RPKM 33.1), CNS E11.5 (RPKM 32.3) and 28 other tissues See more
Orthologs
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Genomic context

See Arln in Genome Data Viewer
Location:
3 G1; 3 53.75 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (122718046..122719843)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (122924397..122926194)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene anaphase-promoting complex subunit 15 pseudogene Neighboring gene RIKEN cDNA 4933405D12 gene Neighboring gene fatty acid binding protein 2, intestinal Neighboring gene STARR-seq mESC enhancer starr_08897 Neighboring gene STARR-positive B cell enhancer ABC_E6116 Neighboring gene ubiquitin specific peptidase 53 Neighboring gene STARR-seq mESC enhancer starr_08899 Neighboring gene myozenin 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

General gene information

Clone Names

  • MGC107621

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in endoplasmic reticulum membrane PubMed 
located_in membrane PubMed 

General protein information

Preferred Names
sarcoplasmic/endoplasmic reticulum calcium ATPase regulator ALN
Names
SERCA regulator ALN
another-regulin
uncharacterized protein C4orf3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024461.2NP_077781.1  sarcoplasmic/endoplasmic reticulum calcium ATPase regulator ALN

    See identical proteins and their annotated locations for NP_077781.1

    Status: VALIDATED

    Source sequence(s)
    AK007721, BC091739
    Consensus CDS
    CCDS38619.1
    UniProtKB/Swiss-Prot
    Q8CEY1, Q99M08
    Related
    ENSMUSP00000102037.4, ENSMUST00000106429.6

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    122718046..122719843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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