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    pentatricopeptide (PPR) repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827926, updated on 18-Sep-2024

    Summary

    Official Full Name
    pentatricopeptide (PPR) repeat-containing protein
    Primary source
    TAIR:AT4G01030
    Locus tag
    AT4G01030
    See related
    Araport:AT4G01030
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3I3.50; F3I3_50
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    Genomic context

    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (447941..450642, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene ncRNA Neighboring gene PYR1-like 7 Neighboring gene Ubiquitin carboxyl-terminal hydrolase family protein Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene thylakoid rhodanese-like protein

    General gene information

    NM_116333.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding  
    enables zinc ion binding  
    Process Evidence Code Pubs
    involved_in RNA modification  
    Component Evidence Code Pubs
    is_active_in cellular_component  

    General protein information

    Preferred Names
    pentatricopeptide (PPR) repeat-containing protein
    NP_192012.2
    • pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G20230.1); Has 44944 Blast hits to 14972 proteins in 296 species: Archae - 1; Bacteria - 32; Metazoa - 191; Fungi - 174; Plants - 43677; Viruses - 0; Other Eukaryotes - 869 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      447941..450642 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116333.3NP_192012.2  pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192012.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV26
      UniProtKB/TrEMBL
      A0A178V2D6
      Conserved Domains (3) summary
      PLN03077
      Location:24766
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:293320
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:153201
      PPR_2; PPR repeat family
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