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Nipsnap3b nipsnap homolog 3B [ Mus musculus (house mouse) ]

Gene ID: 66536, updated on 9-Dec-2024

Summary

Official Symbol
Nipsnap3bprovided by MGI
Official Full Name
nipsnap homolog 3Bprovided by MGI
Primary source
MGI:MGI:1913786
See related
Ensembl:ENSMUSG00000015247 AllianceGenome:MGI:1913786
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Nipsnap3a; 2700063N13Rik
Summary
Predicted to be involved in mitophagy. Located in mitochondrion. Is expressed in cortical plate and genitourinary system. Orthologous to several human genes including NIPSNAP3A (nipsnap homolog 3A). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Ubiquitous expression in liver adult (RPKM 34.0), large intestine adult (RPKM 32.9) and 28 other tissues See more
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Genomic context

See Nipsnap3b in Genome Data Viewer
Location:
4 B2; 4 28.57 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (53011932..53022060)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (53011880..53022060)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 13 subfamily D member 1 Neighboring gene nipsnap homolog 3A Neighboring gene STARR-positive B cell enhancer ABC_E6179 Neighboring gene ATP-binding cassette, sub-family A member 1 Neighboring gene predicted gene, 54225

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Gene trapped (1) 

Interactions

General gene information

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in biological_process  
involved_in mitophagy  
Component Evidence Code Pubs
located_in cytosol  
located_in mitochondrion PubMed 
is_active_in mitochondrion  

General protein information

Preferred Names
protein NipSnap homolog 3B
Names
NIPSNAP-related protein
nipsnap homolog 3A
protein NipSnap homolog 3A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347099.2NP_001334028.1  protein NipSnap homolog 3B isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AL772397
    Consensus CDS
    CCDS84730.1
    UniProtKB/TrEMBL
    B1AWZ5
    Related
    ENSMUSP00000103292.4, ENSMUST00000107665.4
  2. NM_025623.4NP_079899.1  protein NipSnap homolog 3B isoform 1

    See identical proteins and their annotated locations for NP_079899.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AL772397
    Consensus CDS
    CCDS18186.1
    UniProtKB/Swiss-Prot
    B1AWZ4, Q8VHX9, Q9CQE1
    Related
    ENSMUSP00000015391.4, ENSMUST00000015391.10
    Conserved Domains (1) summary
    pfam07978
    Location:146245
    NIPSNAP; NIPSNAP

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    53011932..53022060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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