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prrc2c proline-rich coiled-coil 2C [ Danio rerio (zebrafish) ]

Gene ID: 407633, updated on 9-Dec-2024

Summary

Official Symbol
prrc2cprovided by ZNC
Official Full Name
proline-rich coiled-coil 2Cprovided by ZNC
Primary source
ZFIN:ZDB-GENE-081104-156
See related
Ensembl:ENSDARG00000057583 AllianceGenome:ZFIN:ZDB-GENE-081104-156
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-191d7.6
Summary
Predicted to be involved in cell differentiation. Orthologous to human PRRC2C (proline rich coiled-coil 2C). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See prrc2c in Genome Data Viewer
Location:
chromosome: 20
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (15021747..15080639, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (15125865..15181147, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene vesicle-associated membrane protein 4 Neighboring gene myocilin Neighboring gene si:dkey-239i20.2 Neighboring gene flavin containing dimethylaniline monoxygenase 5

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in cell differentiation  

General protein information

Preferred Names
protein BAT2-like 2; protein PRRC2C
Names
Bat2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    15021747..15080639 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009294615.4XP_009292890.1  protein PRRC2C isoform X1

    UniProtKB/TrEMBL
    A0A286YBN1, A0A8M3AKQ3
    Related
    ENSDARP00000144610.2, ENSDART00000175585.2
    Conserved Domains (1) summary
    pfam07001
    Location:1165
    BAT2_N; BAT2 N-terminus

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395065.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    671..35123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473359.2XP_021329034.1  protein PRRC2C isoform X2

    UniProtKB/TrEMBL
    A0A8M9PW46
    Conserved Domains (1) summary
    pfam07001
    Location:1165
    BAT2_N; BAT2 N-terminus
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