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zgc:112271 zgc:112271 [ Danio rerio (zebrafish) ]

Gene ID: 553698, updated on 9-Dec-2024

Summary

Official Symbol
zgc:112271provided by ZNC
Official Full Name
zgc:112271provided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-443
See related
Ensembl:ENSDARG00000111714 AllianceGenome:ZFIN:ZDB-GENE-050522-443
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable iron-sulfur cluster binding activity. Predicted to be involved in intracellular iron ion homeostasis. Predicted to act upstream of or within protein maturation by iron-sulfur cluster transfer. Predicted to be active in cytosol and nucleus. Orthologous to human BOLA2 (bolA family member 2) and BOLA2B (bolA family member 2B). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See zgc:112271 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (59554785..59563755, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (59251573..59258445, complement)
105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_008805376.1 (810..981)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F Neighboring gene SLX1 homolog B, structure-specific endonuclease subunit Neighboring gene La ribonucleoprotein 7, transcriptional regulator Neighboring gene ribosomal protein L34

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Clone Names

  • MGC112271

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables 2 iron, 2 sulfur cluster binding  
enables iron-sulfur cluster binding  
Component Evidence Code Pubs
is_active_in cytosol  
is_active_in nucleus  

General protein information

Preferred Names
uncharacterized protein LOC553698
Names
bolA-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243171.1NP_001230100.1  uncharacterized protein LOC553698

    See identical proteins and their annotated locations for NP_001230100.1

    Status: VALIDATED

    Source sequence(s)
    EH555052, EH592627
    UniProtKB/TrEMBL
    A0A8M1NYQ9, Q502F6
    Related
    ENSDARP00000146412.1, ENSDART00000186053.1
    Conserved Domains (1) summary
    pfam01722
    Location:1279
    BolA; BolA-like protein

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    59554785..59563755 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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