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    Lyrm9 LYR motif containing 9 [ Mus musculus (house mouse) ]

    Gene ID: 66274, updated on 9-Dec-2024

    Summary

    Official Symbol
    Lyrm9provided by MGI
    Official Full Name
    LYR motif containing 9provided by MGI
    Primary source
    MGI:MGI:1913524
    See related
    Ensembl:ENSMUSG00000072640 AllianceGenome:MGI:1913524
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1810012P15Rik
    Summary
    Orthologous to human LYRM9 (LYR motif containing 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in adrenal adult (RPKM 5.5), testis adult (RPKM 5.5) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Lyrm9 in Genome Data Viewer
    Location:
    11 B5; 11 46.74 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (78717421..78734725)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (78826595..78843899)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene cyclin Q Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:78585506-78585689 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:78643849-78644032 Neighboring gene predicted gene, 23219 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:78665507-78665708 Neighboring gene insulin-like growth factor binding protein 4 pseudogene Neighboring gene predicted gene, 19741

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (1) 

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component  

    General protein information

    Preferred Names
    LYR motif-containing protein 9
    Names
    UPF0631 protein C17orf108 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076681.2NP_001070149.1  LYR motif-containing protein 9

      See identical proteins and their annotated locations for NP_001070149.1

      Status: VALIDATED

      Source sequence(s)
      AK144380, AL592185
      Consensus CDS
      CCDS36240.1
      UniProtKB/Swiss-Prot
      A1L3P7, Q3UN90
      Related
      ENSMUSP00000127853.2, ENSMUST00000147875.9
      Conserved Domains (1) summary
      pfam13232
      Location:1170
      Complex1_LYR_1; Complex1_LYR-like

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      78717421..78734725
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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