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2310057J18Rik RIKEN cDNA 2310057J18 gene [ Mus musculus (house mouse) ]

Gene ID: 67719, updated on 9-Dec-2024

Summary

Official Symbol
2310057J18Rikprovided by MGI
Official Full Name
RIKEN cDNA 2310057J18 geneprovided by MGI
Primary source
MGI:MGI:1914969
See related
Ensembl:ENSMUSG00000015519 AllianceGenome:MGI:1914969
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Leg1; 2210414P04Rik
Summary
Predicted to be active in extracellular space. Orthologous to human C6orf58 (chromosome 6 open reading frame 58). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Restricted expression toward duodenum adult (RPKM 6.6) See more
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Genomic context

See 2310057J18Rik in Genome Data Viewer
Location:
10 A4; 10 16.46 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (28848284..28862302, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (28972288..28986306, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_26169 Neighboring gene thymocyte selection associated Neighboring gene STARR-seq mESC enhancer starr_26170 Neighboring gene pyruvate dehydrogenase E1 alpha 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_26171 Neighboring gene splicing factor 3b, subunit 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_26172 Neighboring gene phosphatidylethanolamine-binding protein pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in extracellular space  
located_in extracellular space  
located_in extracellular space  

General protein information

Preferred Names
protein LEG1 homolog
Names
UPF0762 protein C6orf58 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026336.3NP_080612.1  protein LEG1 homolog precursor

    See identical proteins and their annotated locations for NP_080612.1

    Status: VALIDATED

    Source sequence(s)
    AK008932, AK009921, AK010222
    Consensus CDS
    CCDS23759.1
    UniProtKB/Swiss-Prot
    Q8C6C9, Q8C6D2, Q8C6D6, Q8VDJ0, Q9CPV8, Q9CQ55, Q9D6S4, Q9D745, Q9D775, Q9D7F4, Q9D865
    Related
    ENSMUSP00000015663.7, ENSMUST00000015663.7
    Conserved Domains (1) summary
    pfam05612
    Location:30322
    DUF781; Mouse protein of unknown function (DUF781)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    28848284..28862302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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