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    Tmem179b transmembrane protein 179B [ Mus musculus (house mouse) ]

    Gene ID: 67706, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tmem179bprovided by MGI
    Official Full Name
    transmembrane protein 179Bprovided by MGI
    Primary source
    MGI:MGI:1914956
    See related
    Ensembl:ENSMUSG00000118346 AllianceGenome:MGI:1914956
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    0610031L02Rik; 1500003K22Rik; 1810059G22Rik
    Summary
    Predicted to be located in nuclear speck and nucleolus. Orthologous to human TMEM179B (transmembrane protein 179B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in adrenal adult (RPKM 69.5), thymus adult (RPKM 48.6) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Tmem179b in Genome Data Viewer
    Location:
    19 A; 19 5.55 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (8749886..8751831, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (8772522..8774467, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_45493 Neighboring gene nuclear RNA export factor 1 Neighboring gene transmembrane protein 223 Neighboring gene interferon induced transmembrane protein 2 pseudogene Neighboring gene TATA-box binding protein associated factor 6 like Neighboring gene STARR-positive B cell enhancer ABC_E2519 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide G

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    General gene information

    Clone Names

    • MGC151338, MGC151340

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in membrane  
    located_in nuclear speck  
    located_in nuclear speck  
    located_in nucleolus  
    located_in nucleolus  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026325.3NP_080601.2  transmembrane protein 179B precursor

      See identical proteins and their annotated locations for NP_080601.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC025794, BC116961
      Consensus CDS
      CCDS29545.1
      UniProtKB/Swiss-Prot
      Q9CY24, Q9D8L7
      Related
      ENSMUSP00000010249.6, ENSMUST00000010249.7

    RNA

    1. NR_028418.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks two internal exons compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AC025794, AK002731
      Related
      ENSMUST00000235756.2
    2. NR_028419.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AC025794, AK005135
      Related
      ENSMUST00000237634.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      8749886..8751831 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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