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Ripk4 receptor-interacting serine-threonine kinase 4 [ Mus musculus (house mouse) ]

Gene ID: 72388, updated on 9-Dec-2024

Summary

Official Symbol
Ripk4provided by MGI
Official Full Name
receptor-interacting serine-threonine kinase 4provided by MGI
Primary source
MGI:MGI:1919638
See related
Ensembl:ENSMUSG00000005251 AllianceGenome:MGI:1919638
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
DIk; PKK; RIP4; ANKK2; Ankrd3; 2310069J12Rik
Summary
Enables protein serine kinase activity. Involved in skin development. Located in cytoplasm. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; integumental system; and sensory organ. Used to study popliteal pterygium syndrome. Orthologous to human RIPK4 (receptor interacting serine/threonine kinase 4). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Broad expression in bladder adult (RPKM 16.9), colon adult (RPKM 10.1) and 17 other tissues See more
Orthologs
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Genomic context

See Ripk4 in Genome Data Viewer
Location:
16 C4; 16 57.63 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (97543133..97564979, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (97741933..97763779, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_41635 Neighboring gene predicted gene, 41512 Neighboring gene predicted gene, 41513 Neighboring gene STARR-seq mESC enhancer starr_41639 Neighboring gene PR domain containing 15 Neighboring gene C2 calcium-dependent domain containing 2 Neighboring gene microRNA 6964

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (5)  1 citation

Pathways from PubChem

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables 3-phosphoinositide-dependent protein kinase activity  
enables AMP-activated protein kinase activity  
enables ATP binding  
enables DNA-dependent protein kinase activity  
enables Rho-dependent protein serine/threonine kinase activity  
enables eukaryotic translation initiation factor 2alpha kinase activity  
enables histone H2AS1 kinase activity  
enables histone H2AS121 kinase activity  
enables histone H2AT120 kinase activity  
enables histone H2AXS139 kinase activity  
enables histone H2BS14 kinase activity  
enables histone H2BS36 kinase activity  
enables histone H3S10 kinase activity  
enables histone H3S28 kinase activity  
enables histone H3S57 kinase activity  
enables histone H3T11 kinase activity  
enables histone H3T3 kinase activity  
enables histone H3T45 kinase activity  
enables histone H3T6 kinase activity  
enables histone H4S1 kinase activity  
enables protein binding PubMed 
enables protein serine kinase activity PubMed 
enables ribosomal protein S6 kinase activity  
Component Evidence Code Pubs
is_active_in cytoplasm  
located_in cytoplasm PubMed 
located_in membrane  

General protein information

Preferred Names
receptor-interacting serine/threonine-protein kinase 4
Names
PKC-associated protein kinase
PKC-regulated protein kinase
ankyrin repeat domain-containing protein 3
NP_076152.2
XP_011244456.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_023663.7NP_076152.2  receptor-interacting serine/threonine-protein kinase 4

    See identical proteins and their annotated locations for NP_076152.2

    Status: VALIDATED

    Source sequence(s)
    AC121560
    Consensus CDS
    CCDS28360.1
    UniProtKB/Swiss-Prot
    Q3UM04, Q9ERK0
    Related
    ENSMUSP00000019386.9, ENSMUST00000019386.10
    Conserved Domains (5) summary
    smart00219
    Location:26279
    TyrKc; Tyrosine kinase, catalytic domain
    cd00204
    Location:600725
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    cd14025
    Location:25290
    STKc_RIP4_like; Catalytic domain of the Serine/Threonine kinases, Receptor Interacting Protein 4 and similar proteins
    pfam12796
    Location:610701
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:605636
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    97543133..97564979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011246154.2XP_011244456.1  receptor-interacting serine/threonine-protein kinase 4 isoform X1

    UniProtKB/TrEMBL
    D3YXY4
    Conserved Domains (4) summary
    PHA03095
    Location:410654
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:542573
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:613703
    Ank_2; Ankyrin repeats (3 copies)
    cl21453
    Location:1227
    PKc_like; Protein Kinases, catalytic domain
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