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Zfp870 zinc finger protein 870 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362845, updated on 9-Dec-2024

Summary

Official Symbol
Zfp870provided by RGD
Official Full Name
zinc finger protein 870provided by RGD
Primary source
RGD:1597136
See related
EnsemblRapid:ENSRNOG00000030416 AllianceGenome:RGD:1597136
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Zfp709l2
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cellular lipid metabolic process. Predicted to be active in nucleus. Orthologous to human ZNF670 (zinc finger protein 670). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Heart (RPKM 60.4), Muscle (RPKM 56.5) and 9 other tissues See more
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Genomic context

See Zfp870 in Genome Data Viewer
Location:
7q11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (12640653..12654320, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (11990146..12003813, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (15158673..15172489, complement)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene ferritin light chain 1 like 5 Neighboring gene zinc finger protein 14-like Neighboring gene zinc finger protein 799 Neighboring gene nuclear transport factor 2 like 1 Neighboring gene cytochrome P450, family 4, subfamily f, polypeptide 1 Neighboring gene cytochrome P450, family 4, subfamily f, polypeptide 6

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in nucleus  

General protein information

Preferred Names
zinc finger protein 709-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163062.1NP_001156534.1  zinc finger protein 709-like 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000007
    UniProtKB/TrEMBL
    F1M9J2
    Related
    ENSRNOP00000045589.3, ENSRNOT00000042638.6
    Conserved Domains (6) summary
    smart00349
    Location:458
    KRAB; krueppel associated box
    COG5048
    Location:355543
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:359379
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:443
    KRAB; KRAB box
    pfam13465
    Location:371394
    zf-H2C2_2; Zinc-finger double domain
    cl19284
    Location:260321
    Ribosomal_L37ae; Ribosomal L37ae protein family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    12640653..12654320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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