PMC Links for Taxonomy (Select 393921) - PMC

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Items: 20

Select item 68928931.

Synthetic chimeric nucleases function for efficient genome editing

R. M. Liu, L. L. Liang, E. Freed, H. Chang, E. Oh, Z. Y. Liu, A. Garst, C. A. Eckert, R. T. Gill

Nat Commun. 2019; 10: 5524. Published online 2019 Dec 4. doi: 10.1038/s41467-019-13500-y

PMCID:: PMC6892893

Abstract Article PDF–1.3M

Select item 67679942.

Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes

Marina García-López, Jan P. Meier-Kolthoff, Brian J. Tindall, Sabine Gronow, Tanja Woyke, Nikos C. Kyrpides, Richard L. Hahnke, Markus Göker

Front Microbiol. 2019; 10: 2083. Published online 2019 Sep 23. doi: 10.3389/fmicb.2019.02083

PMCID:: PMC6767994

Abstract Article PDF–19M

Select item 66692123.

Antibacterial effects of sodium tripolyphosphate against Porphyromonas species associated with periodontitis of companion animals

Jae-Hyung Lee, Ji-Hoi Moon, Jae-In Ryu, Sang Wook Kang, Kyu Hwan Kwack, Jin-Yong Lee

J Vet Sci. 2019 Jul; 20(4): e33. Published online 2019 Jul 9. doi: 10.4142/jvs.2019.20.e33

PMCID:: PMC6669212

Abstract Article PDF–7.0M

Select item 65071194.

CRISPR Cpf1 proteins: structure, function and implications for genome editing

Fatemeh Safari, Khadijeh Zare, Manica Negahdaripour, Mazyar Barekati-Mowahed, Younes Ghasemi

Cell Biosci. 2019; 9: 36. Published online 2019 May 9. doi: 10.1186/s13578-019-0298-7

PMCID:: PMC6507119

Abstract Article PDF–1.4M

Select item 62560245.

Role of Acetyltransferase PG1842 in Gingipain Biogenesis in Porphyromonas gingivalis

Arunima Mishra, Francis Roy, Yuetan Dou, Kangling Zhang, Hui Tang, Hansel M. Fletcher

J Bacteriol. 2018 Dec 15; 200(24): e00385-18. Prepublished online 2018 Sep 24. Published online 2018 Nov 26. doi: 10.1128/JB.00385-18

PMCID:: PMC6256024

Abstract Article PDF–2.7M

Select item 62247996.

Engineering the Direct Repeat Sequence of crRNA for Optimization of FnCpf1-Mediated Genome Editing in Human Cells

Li Lin, Xiubin He, Tianyuan Zhao, Lingkai Gu, Yeqing Liu, Xiaoyu Liu, Hongyan Liu, Fayu Yang, Mengjun Tu, Lianchao Tang, Xianglian Ge, Changbao Liu, Junzhao Zhao, Zongming Song, Jia Qu, Feng Gu

Mol Ther. 2018 Nov 7; 26(11): 2650–2657. Published online 2018 Sep 1. doi: 10.1016/j.ymthe.2018.08.021

PMCID:: PMC6224799

Abstract Article PDF–1.6M

Select item 57374327.

A ‘new lease of life’: FnCpf1 possesses DNA cleavage activity for genome editing in human cells

Mengjun Tu, Li Lin, Yilu Cheng, Xiubin He, Huihui Sun, Haihua Xie, Junhao Fu, Changbao Liu, Jin Li, Ding Chen, Haitao Xi, Dongyu Xue, Qi Liu, Junzhao Zhao, Caixia Gao, Zongming Song, Jia Qu, Feng Gu

Nucleic Acids Res. 2017 Nov 2; 45(19): 11295–11304. Published online 2017 Sep 7. doi: 10.1093/nar/gkx783

PMCID:: PMC5737432

Abstract Article PDF–4.7M

Select item 55624078.

Engineering CRISPR-Cpf1 crRNAs and mRNAs to maximize genome editing efficiency

Bin Li, Weiyu Zhao, Xiao Luo, Xinfu Zhang, Chenglong Li, Chunxi Zeng, Yizhou Dong

Nat Biomed Eng. Author manuscript; available in PMC 2017 Nov 10.

Published in final edited form as: Nat Biomed Eng. 2017 May; 1(5): 0066. Published online 2017 May 10. doi: 10.1038/s41551-017-0066

PMCID:: PMC5562407

Abstract Article PDF–2.7M

Select item 54947429.

Using Tn-seq To Identify Pigmentation-Related Genes of Porphyromonas gingivalis: Characterization of the Role of a Putative Glycosyltransferase

Brian A. Klein, Louis P. Cornacchione, Marisha Collins, Michael H. Malamy, Margaret J. Duncan, Linden T. Hu

J Bacteriol. 2017 Jul 15; 199(14): e00832-16. Prepublished online 2017 May 8. Published online 2017 Jun 27. doi: 10.1128/JB.00832-16

PMCID:: PMC5494742

Abstract Article PDF–771K

Select item 549177410.

A structure-derived snap-trap mechanism of a multispecific serpin from the dysbiotic human oral microbiome

Theodoros Goulas, Miroslaw Ksiazek, Irene Garcia-Ferrer, Alicja M. Sochaj-Gregorczyk, Irena Waligorska, Marcin Wasylewski, Jan Potempa, F. Xavier Gomis-Rüth

J Biol Chem. 2017 Jun 30; 292(26): 10883–10898. Published online 2017 May 16. doi: 10.1074/jbc.M117.786533

PMCID:: PMC5491774

Abstract Article PDF–3.8M

Select item 470095111.

Comparative Genomics of the Genus Porphyromonas Identifies Adaptations for Heme Synthesis within the Prevalent Canine Oral Species Porphyromonas cangingivalis

Ciaran O’Flynn, Oliver Deusch, Aaron E. Darling, Jonathan A. Eisen, Corrin Wallis, Ian J. Davis, Stephen J. Harris

Genome Biol Evol. 2015 Dec; 7(12): 3397–3413. Published online 2015 Nov 13. doi: 10.1093/gbe/evv220

PMCID:: PMC4700951

Abstract Article PDF–1.5M

Select item 439214412.

Draft Genome Sequences of 26 Porphyromonas Strains Isolated from the Canine Oral Microbiome

David A. Coil, Alexandra Alexiev, Corrin Wallis, Ciaran O’Flynn, Oliver Deusch, Ian Davis, Alexander Horsfall, Nicola Kirkwood, Guillaume Jospin, Jonathan A. Eisen, Stephen Harris, Aaron E. Darling

Genome Announc. 2015 Mar-Apr; 3(2): e00187-15. Published online 2015 Apr 9. doi: 10.1128/genomeA.00187-15

PMCID:: PMC4392144

Abstract Article PDF–160K

Select item 373506013.

Draft Genome Sequences of Porphyromonas crevioricanis JCM 15906^T and Porphyromonas cansulci JCM 13913^T Isolated from a Canine Oral Cavity

Mitsuo Sakamoto, Naoto Tanaka, Yuh Shiwa, Hirofumi Yoshikawa, Moriya Ohkuma

Genome Announc. 2013 Jul-Aug; 1(4): e00483-13. Published online 2013 Jul 25. doi: 10.1128/genomeA.00483-13

PMCID:: PMC3735060

Abstract Article PDF–134K

Select item 333862914.

The Canine Oral Microbiome

Floyd E. Dewhirst, Erin A. Klein, Emily C. Thompson, Jessica M. Blanton, Tsute Chen, Lisa Milella, Catherine M. F. Buckley, Ian J. Davis, Marie-Lousie Bennett, Zoe V. Marshall-Jones

PLoS One. 2012; 7(4): e36067. Published online 2012 Apr 27. doi: 10.1371/journal.pone.0036067