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Select item 70547741.

A Specific Mutation in Muc2 Determines Early Dysbiosis in Colitis-Prone Winnie Mice

Marina Liso, Stefania De Santis, Giulio Verna, Manuela Dicarlo, Maria Calasso, Angelo Santino, Isabella Gigante, Rajaraman Eri, Sathuwarman Raveenthiraraj, Anastasia Sobolewski, Valeria Palmitessa, Antonio Lippolis, Mauro Mastronardi, Raffaele Armentano, Grazia Serino, Maria De Angelis, Marcello Chieppa

Inflamm Bowel Dis. 2020 Apr; 26(4): 546–556. Published online 2019 Nov 21. doi: 10.1093/ibd/izz279

PMCID:: PMC7054774

Article PDF–15M

Select item 70292222.

Comparative Analysis of Root Microbiomes of Rice Cultivars with High and Low Methane Emissions Reveals Differences in Abundance of Methanogenic Archaea and Putative Upstream Fermenters

Zachary Liechty, Christian Santos-Medellín, Joseph Edwards, Bao Nguyen, David Mikhail, Shane Eason, Gregory Phillips, Venkatesan Sundaresan

mSystems. 2020 Jan-Feb; 5(1): e00897-19. Published online 2020 Feb 18. doi: 10.1128/mSystems.00897-19

PMCID:: PMC7029222

Article PDF–3.1M

Select item 69745843.

Core and Differentially Abundant Bacterial Taxa in the Rhizosphere of Field Grown Brassica napus Genotypes: Implications for Canola Breeding

Zelalem M. Taye, Bobbi L. Helgason, Jennifer K. Bell, Charlotte E. Norris, Sally Vail, Stephen J. Robinson, Isobel A. P. Parkin, Melissa Arcand, Steven Mamet, Matthew G. Links, Tanner Dowhy, Steven Siciliano, Eric G. Lamb

Front Microbiol. 2019; 10: 3007. Published online 2020 Jan 15. doi: 10.3389/fmicb.2019.03007

PMCID:: PMC6974584

Article PDF–4.3M

Select item 69199394.

Calcium exerts a strong influence upon phosphohydrolase gene abundance and phylogenetic diversity in soil

Andrew L. Neal, Margaret J. Glendining

Soil Biol Biochem. 2019 Dec; 139: 107613. doi: 10.1016/j.soilbio.2019.107613

PMCID:: PMC6919939

Article

Select item 68211425.

Comparative metatranscriptome analysis revealed broad response of microbial communities in two soil types, agriculture versus organic soil

Pushpender Kumar Sharma, Vinay Sharma, Shailesh Sharma, Garima Bhatia, Kashmir Singh, Rohit Sharma

J Genet Eng Biotechnol. 2019 Dec; 17: 6. Published online 2019 Oct 14. doi: 10.1186/s43141-019-0006-3

PMCID:: PMC6821142

Article PDF–1.4M

Select item 68134496.

The influence of temperature and pH on bacterial community composition of microbial mats in hot springs from Costa Rica

Lorena Uribe‐Lorío, Laura Brenes-Guillén, Walter Hernández‐Ascencio, Raúl Mora‐Amador, Gino González, Carlos J. Ramírez‐Umaña, Beatriz Díez, Carlos Pedrós‐Alió

Microbiologyopen. 2019 Oct; 8(10): e893. Published online 2019 Jul 4. doi: 10.1002/mbo3.893

PMCID:: PMC6813449

Article PDF–2.4M

Select item 67978277.

Microbiomes in Soils Exposed to Naturally High Concentrations of CO₂ (Bossoleto Mofette Tuscany, Italy)

Stefano Fazi, Fabrizio Ungaro, Stefania Venturi, Lara Vimercati, Carolina Cruz Viggi, Silvia Baronti, Francesca Ugolini, Costanza Calzolari, Franco Tassi, Orlando Vaselli, Antonio Raschi, Federico Aulenta

Front Microbiol. 2019; 10: 2238. Published online 2019 Oct 4. doi: 10.3389/fmicb.2019.02238

PMCID:: PMC6797827

Article PDF–9.1M

Select item 67593428.

Geochemical and Metagenomic Characterization of Jinata Onsen, a Proterozoic-Analog Hot Spring, Reveals Novel Microbial Diversity including Iron-Tolerant Phototrophs and Thermophilic Lithotrophs

Lewis M. Ward, Airi Idei, Mayuko Nakagawa, Yuichiro Ueno, Woodward W. Fischer, Shawn E. McGlynn

Microbes Environ. 2019 Sep; 34(3): 278–292. Published online 2019 Aug 14. doi: 10.1264/jsme2.ME19017

PMCID:: PMC6759342

Article PDF–2.5M

Select item 67536309.

The Phylogeny, Biodiversity, and Ecology of the Chloroflexi in Activated Sludge

Lachlan B. M. Speirs, Daniel T. F. Rice, Steve Petrovski, Robert J. Seviour

Front Microbiol. 2019; 10: 2015. Published online 2019 Sep 13. doi: 10.3389/fmicb.2019.02015

PMCID:: PMC6753630

Article PDF–1.8M

Select item 674903710.

Quorum Sensing Signaling Alters Virulence Potential and Population Dynamics in Complex Microbiome-Host Interactomes

F. Jerry Reen, José A. Gutiérrez-Barranquero, Ronan R. McCarthy, David F. Woods, Sara Scarciglia, Claire Adams, Kristian Fog Nielsen, Lone Gram, Fergal O’Gara

Front Microbiol. 2019; 10: 2131. Published online 2019 Sep 11. doi: 10.3389/fmicb.2019.02131

PMCID:: PMC6749037

Article PDF–2.2M

Select item 672343711.

Changes in the Microbial Community Diversity of Oil Exploitation

Jingjing Liu, Jing Wu, Jiawei Lin, Jian Zhao, Tianyi Xu, Qichang Yang, Jing Zhao, Zhongming Zhao, Xiaofeng Song

Genes (Basel) 2019 Aug; 10(8): 556. Published online 2019 Jul 24. doi: 10.3390/genes10080556

PMCID:: PMC6723437

Article PDF–3.2M

Select item 664020912.

An Expanded Ribosomal Phylogeny of Cyanobacteria Supports a Deep Placement of Plastids

Kelsey R. Moore, Cara Magnabosco, Lily Momper, David A. Gold, Tanja Bosak, Gregory P. Fournier

Front Microbiol. 2019; 10: 1612. Published online 2019 Jul 12. doi: 10.3389/fmicb.2019.01612

PMCID:: PMC6640209

Article PDF–1.8M

Select item 662937613.

The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions

Alessandro W Rossoni, Dana C Price, Mark Seger, Dagmar Lyska, Peter Lammers, Debashish Bhattacharya, Andreas PM Weber

eLife. 2019; 8: e45017. Published online 2019 May 31. doi: 10.7554/eLife.45017

PMCID:: PMC6629376

Article PDF–6.6M

Select item 662473714.

Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures

Scott C. Thomas, Kevin O. Tamadonfar, Cale O. Seymour, Dengxun Lai, Jeremy A. Dodsworth, Senthil K. Murugapiran, Emiley A. Eloe-Fadrosh, Paul Dijkstra, Brian P. Hedlund

Front Microbiol. 2019; 10: 1427. Published online 2019 Jul 5. doi: 10.3389/fmicb.2019.01427

PMCID:: PMC6624737

Article PDF–2.0M

Select item 652858515.

Comparative study of gut microbiota in wild and captive Malaysian Mahseer (Tor tambroides)

Chun K. Tan, Ikhsan Natrah, Iswan B. Suyub, Marilyn J. Edward, Nazrien Kaman, Anjas A. Samsudin

Microbiologyopen. 2019 May; 8(5): e00734. Published online 2018 Oct 23. doi: 10.1002/mbo3.734

PMCID:: PMC6528585

Article PDF–1.0M

Select item 650761916.

Neglected Effects of Inoculum Preservation on the Start-Up of Psychrophilic Bioelectrochemical Systems and Shaping Bacterial Communities at Low Temperature

Sidan Lu, Binghan Xie, Bingfeng Liu, Baiyun Lu, Defeng Xing

Front Microbiol. 2019; 10: 935. Published online 2019 May 2. doi: 10.3389/fmicb.2019.00935

PMCID:: PMC6507619

Article PDF–6.6M

Select item 649779917.

Genome Features and Secondary Metabolites Biosynthetic Potential of the Class Ktedonobacteria

Yu Zheng, Ayana Saitou, Chiung-Mei Wang, Atsushi Toyoda, Yohei Minakuchi, Yuji Sekiguchi, Kenji Ueda, Hideaki Takano, Yasuteru Sakai, Keietsu Abe, Akira Yokota, Shuhei Yabe

Front Microbiol. 2019; 10: 893. Published online 2019 Apr 26. doi: 10.3389/fmicb.2019.00893

PMCID:: PMC6497799

Article PDF–7.9M

Select item 649507818.

Microbial community shifts in the oxic-settling-anoxic process in response to changes to sludge interchange ratio

Agne Karlikanovaite-Balikci, E. Gozde Ozbayram, Nevin Yagci, Orhan Ince

Heliyon. 2019 Apr; 5(4): e01517. Published online 2019 Apr 29. doi: 10.1016/j.heliyon.2019.e01517

PMCID:: PMC6495078

Article PDF–1.4M

Select item 638793119.

Metagenomic and Resistome Analysis of a Full-Scale Municipal Wastewater Treatment Plant in Singapore Containing Membrane Bioreactors

Charmaine Ng, Boonfei Tan, Xiao-Tao Jiang, Xiaoqiong Gu, Hongjie Chen, Bradley William Schmitz, Laurence Haller, Francis Rathinam Charles, Tong Zhang, Karina Gin

Front Microbiol. 2019; 10: 172. Published online 2019 Feb 18. doi: 10.3389/fmicb.2019.00172

PMCID:: PMC6387931

Article PDF–4.9M

Select item 634590920.

Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect

Pierre Plassart, Nicolas Chemidlin Prévost-Bouré, Stéphane Uroz, Samuel Dequiedt, Dorothy Stone, Rachel Creamer, Robert I. Griffiths, Mark J. Bailey, Lionel Ranjard, Philippe Lemanceau

Sci Rep. 2019; 9: 605. Published online 2019 Jan 24. doi: 10.1038/s41598-018-36867-2