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Select item 69891291.

Effects of Antibiotic Pretreatment of an Ulcerative Colitis-Derived Fecal Microbial Community on the Integration of Therapeutic Bacteria In Vitro

Kaitlyn Oliphant, Kyla Cochrane, Kathleen Schroeter, Michelle C. Daigneault, Sandi Yen, Elena F. Verdu, Emma Allen-Vercoe

mSystems. 2020 Jan-Feb; 5(1): e00404-19. Published online 2020 Jan 28. doi: 10.1128/mSystems.00404-19

PMCID:: PMC6989129

Article PDF–1.1M

Select item 69770702.

Planktonic and Sessile Artificial Colonic Microbiota Harbor Distinct Composition and Reestablish Differently upon Frozen and Freeze-Dried Long-Term Storage

Lea Bircher, Clarissa Schwab, Annelies Geirnaert, Anna Greppi, Christophe Lacroix

mSystems. 2020 Jan-Feb; 5(1): e00521-19. Published online 2020 Jan 21. doi: 10.1128/mSystems.00521-19

PMCID:: PMC6977070

Article PDF–2.9M

Select item 69377283.

Primary progressive multiple sclerosis in a Russian cohort: relationship with gut bacterial diversity

Madina Kozhieva, Natalia Naumova, Tatiana Alikina, Alexey Boyko, Valentin Vlassov, Marsel R. Kabilov

BMC Microbiol. 2019; 19: 309. Published online 2019 Dec 30. doi: 10.1186/s12866-019-1685-2

PMCID:: PMC6937728

Article PDF–783K

Select item 67970834.

Mechanically resolved imaging of bacteria using expansion microscopy

Youngbin Lim, Anthony L. Shiver, Margarita Khariton, Keara M. Lane, Katharine M. Ng, Samuel R. Bray, Jian Qin, Kerwyn Casey Huang, Bo Wang

PLoS Biol. 2019 Oct; 17(10): e3000268. Published online 2019 Oct 17. doi: 10.1371/journal.pbio.3000268

PMCID:: PMC6797083

Article PDF–2.3M

Select item 65905645.

Prebiotic Potential of Culinary Spices Used to Support Digestion and Bioabsorption

Christine T. Peterson, Dmitry A. Rodionov, Stanislav N. Iablokov, Meredith A. Pung, Deepak Chopra, Paul J. Mills, Scott N. Peterson

Evid Based Complement Alternat Med. 2019; 2019: 8973704. Published online 2019 Jun 2. doi: 10.1155/2019/8973704

PMCID:: PMC6590564

Article PDF–1.4M

Select item 65296966.

Dietary supplementation with partially hydrolyzed guar gum helps improve constipation and gut dysbiosis symptoms and behavioral irritability in children with autism spectrum disorder

Ryo Inoue, Yuko Sakaue, Yuki Kawada, Ryuji Tamaki, Zenta Yasukawa, Makoto Ozeki, Satoko Ueba, Chihiro Sawai, Kazuo Nonomura, Takamitsu Tsukahara, Yuji Naito

J Clin Biochem Nutr. 2019 May; 64(3): 217–223. Published online 2019 Mar 7. doi: 10.3164/jcbn.18-105

PMCID:: PMC6529696

Article PDF–668K

Select item 64244477.

16S rRNA gene profiling and genome reconstruction reveal community metabolic interactions and prebiotic potential of medicinal herbs used in neurodegenerative disease and as nootropics

Christine Tara Peterson, Vandana Sharma, Stanislav N. Iablokov, Levent Albayrak, Kamil Khanipov, Sasha Uchitel, Deepak Chopra, Paul J. Mills, Yuriy Fofanov, Dmitry A. Rodionov, Scott N. Peterson

PLoS One. 2019; 14(3): e0213869. Published online 2019 Mar 19. doi: 10.1371/journal.pone.0213869

PMCID:: PMC6424447

Article PDF–3.4M

Select item 63630628.

Conventional culture methods with commercially available media unveil the presence of novel culturable bacteria

Tamaki Ito, Tsuyoshi Sekizuka, Norimi Kishi, Akifumi Yamashita, Makoto Kuroda

Gut Microbes. 2019; 10(1): 77–91. Published online 2018 Aug 17. doi: 10.1080/19490976.2018.1491265

PMCID:: PMC6363062

Article PDF–2.5M

Select item 59777369.

Energetic evolution of cellular Transportomes

Behrooz Darbani, Douglas B. Kell, Irina Borodina

BMC Genomics. 2018; 19: 418. Published online 2018 May 30. doi: 10.1186/s12864-018-4816-5

PMCID:: PMC5977736

Article PDF–1.3M

Select item 570776910.

Protease-Mediated Suppression of DRG Neuron Excitability by Commensal Bacteria

Jessica L. Sessenwein, Corey C. Baker, Sabindra Pradhananga, Megan E. Maitland, Elaine O. Petrof, Emma Allen-Vercoe, Curtis Noordhof, David E. Reed, Stephen J. Vanner, Alan E. Lomax

J Neurosci. 2017 Nov 29; 37(48): 11758–11768. doi: 10.1523/JNEUROSCI.1672-17.2017

PMCID:: PMC5707769

Article PDF–1.0M

Select item 517753711.

A human gut ecosystem protects against C. difficile disease by targeting TcdA

Sarah Lynn Martz, Mabel Guzman-Rodriguez, Shu-Mei He, Curtis Noordhof, David John Hurlbut, Gregory Brian Gloor, Christian Carlucci, Scott Weese, Emma Allen-Vercoe, Jun Sun, Erika Chiong Claud, Elaine Olga Petrof

J Gastroenterol. Author manuscript; available in PMC 2018 Apr 1.

Published in final edited form as: J Gastroenterol. 2017 Apr; 52(4): 452–465. Published online 2016 Jun 21. doi: 10.1007/s00535-016-1232-y

PMCID:: PMC5177537

Article PDF–1.9M

Select item 506311912.

Membrane filter method to study the effects of Lactobacillus acidophilus and Bifidobacterium longum on fecal microbiota

Hidenori Shimizu, Yoshimi Benno

Microbiol Immunol. 2015 Nov; 59(11): 643–652. Published online 2015 Nov 24. doi: 10.1111/1348-0421.12332

PMCID:: PMC5063119

Article PDF–796K

Select item 500711413.

Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes

Luisa CS Antunes, Daniel Poppleton, Andreas Klingl, Alexis Criscuolo, Bruno Dupuy, Céline Brochier-Armanet, Christophe Beloin, Simonetta Gribaldo

eLife. 2016; 5: e14589. Published online 2016 Aug 31. doi: 10.7554/eLife.14589

PMCID:: PMC5007114

Article PDF–2.2M

Select item 498845814.

Rebooting the microbiome

Sean Munoz, Mabel Guzman-Rodriguez, Jun Sun, Yong-guo Zhang, Curtis Noordhof, Shu-Mei He, Emma Allen-Vercoe, Erika C. Claud, Elaine O. Petrof

Gut Microbes. 2016; 7(4): 353–363. Published online 2016 May 13. doi: 10.1080/19490976.2016.1188248

PMCID:: PMC4988458

Article PDF–1.0M

Select item 493368815.

Comparison of the gut microbial community between obese and lean peoples using 16S gene sequencing in a Japanese population

Akira Andoh, Atsushi Nishida, Kenichiro Takahashi, Osamu Inatomi, Hirotsugu Imaeda, Shigeki Bamba, Katsuyuki Kito, Mitsushige Sugimoto, Toshio Kobayashi

J Clin Biochem Nutr. 2016 Jul; 59(1): 65–70. Published online 2016 Apr 29. doi: 10.3164/jcbn.15-152

PMCID:: PMC4933688

Article PDF–481K

Select item 477121216.

A Structure-Based Classification of Class A β-Lactamases, a Broadly Diverse Family of Enzymes

Alain Philippon, Patrick Slama, Paul Dény, Roger Labia

Clin Microbiol Rev. 2016 Jan; 29(1): 29–57. Published online 2015 Oct 28. doi: 10.1128/CMR.00019-15

PMCID:: PMC4771212

Article PDF–8.0M

Select item 463203817.

Administration of defined microbiota is protective in a murine Salmonella infection model

Sarah-Lynn E. Martz, Julie A. K. McDonald, Jun Sun, Yong-guo Zhang, Gregory B. Gloor, Curtis Noordhof, Shu-Mei He, Teklu K. Gerbaba, Michael Blennerhassett, David J. Hurlbut, Emma Allen-Vercoe, Erika C. Claud, Elaine O. Petrof

Sci Rep. 2015; 5: 16094. Published online 2015 Nov 4. doi: 10.1038/srep16094

PMCID:: PMC4632038

Article PDF–1.8M

Select item 430628218.

Genome Diversity of Spore-Forming Firmicutes

Michael Y. Galperin

Microbiol Spectr. Author manuscript; available in PMC 2015 Jan 26.

Published in final edited form as: Microbiol Spectr. 2013 Dec; 1(2): TBS-0015-2012. Published online 2013 Dec 27. doi: 10.1128/microbiolspectrum.TBS-0015-2012

PMCID:: PMC4306282

Article PDF–379K

Select item 416071219.

Changes of the human gut microbiome induced by a fermented milk product

Patrick Veiga, Nicolas Pons, Anurag Agrawal, Raish Oozeer, Denis Guyonnet, Rémi Brazeilles, Jean-Michel Faurie, Johan E. T. van Hylckama Vlieg, Lesley A. Houghton, Peter J. Whorwell, S. Dusko Ehrlich, Sean P. Kennedy

Sci Rep. 2014; 4: 6328. Published online 2014 Sep 11. doi: 10.1038/srep06328