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Items: 1 to 20 of 52

1.
Complete chloroplast genomes of two Siraitia Merrill species: Comparative analysis, positive selection and novel molecular marker development
Hongwu Shi, Meng Yang, Changming Mo, Wenjuan Xie, Chang Liu, Bin Wu, Xiaojun Ma
PLoS One. 2019; 14(12): e0226865. Published online 2019 Dec 20. doi: 10.1371/journal.pone.0226865
PMCID:
PMC6924677
ArticlePDF–4.4M
2.
Engineering Pseudomonas putida for isoprenoid production by manipulating endogenous and shunt pathways supplying precursors
Sofía Hernandez-Arranz, Jordi Perez-Gil, Dominic Marshall-Sabey, Manuel Rodriguez-Concepcion
Microb Cell Fact. 2019; 18: 152. Published online 2019 Sep 9. doi: 10.1186/s12934-019-1204-z
PMCID:
PMC6734295
ArticlePDF–1.7M
3.
Chromium Hyper-Tolerant Bacillus sp. MH778713 Assists Phytoremediation of Heavy Metals by Mesquite Trees (Prosopis laevigata)
Verónica Ramírez, Antonino Baez, Primavera López, Rocío Bustillos, Miguel Ángel Villalobos, Ricardo Carreño, José Luis Contreras, Jesús Muñoz-Rojas, Luis Ernesto Fuentes, Javier Martínez, José Antonio Munive
Front Microbiol. 2019; 10: 1833. Published online 2019 Aug 13. doi: 10.3389/fmicb.2019.01833
PMCID:
PMC6700308
ArticlePDF–1.8M
4.
Pseudomonas putida KT2440 is HV1 certified, not GRAS
Linde F. C. Kampers, Rita J. M. Volkers, Vitor A. P. Martins dos Santos
Microb Biotechnol. 2019 Sep; 12(5): 845–848. Published online 2019 Jun 14. doi: 10.1111/1751-7915.13443
PMCID:
PMC6680625
ArticlePDF–97K
5.
Time-Course Proteomic Analysis of Pseudomonas putida KT2440 during Mcl-Polyhydroxyalkanoate Synthesis under Nitrogen Deficiency
Justyna Możejko-Ciesielska, Agnieszka Mostek
Polymers (Basel) 2019 May; 11(5): 748. Published online 2019 Apr 26. doi: 10.3390/polym11050748
PMCID:
PMC6571654
ArticlePDF–2.1M
6.
A 2D-DIGE-based proteomic analysis brings new insights into cellular responses of Pseudomonas putida KT2440 during polyhydroxyalkanoates synthesis
Justyna Możejko-Ciesielska, Agnieszka Mostek
Microb Cell Fact. 2019; 18: 93. Published online 2019 May 28. doi: 10.1186/s12934-019-1146-5
PMCID:
PMC6537436
ArticlePDF–1.9M
7.
CRISPR Cpf1 proteins: structure, function and implications for genome editing
Fatemeh Safari, Khadijeh Zare, Manica Negahdaripour, Mazyar Barekati-Mowahed, Younes Ghasemi
Cell Biosci. 2019; 9: 36. Published online 2019 May 9. doi: 10.1186/s13578-019-0298-7
PMCID:
PMC6507119
ArticlePDF–1.4M
8.
Gene Editing and Systems Biology Tools for Pesticide Bioremediation: A Review
Shweta Jaiswal, Dileep Kumar Singh, Pratyoosh Shukla
Front Microbiol. 2019; 10: 87. Published online 2019 Feb 13. doi: 10.3389/fmicb.2019.00087
PMCID:
PMC6396717
ArticlePDF–1.5M
9.
Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes
Joana C. Xavier, Kiran Raosaheb Patil, Isabel Rocha
PLoS Comput Biol. 2018 Nov; 14(11): e1006556. Published online 2018 Nov 16. doi: 10.1371/journal.pcbi.1006556
PMCID:
PMC6283598
ArticlePDF–3.4M
10.
Calculation of Single Cell Assimilation Rates From SIP-NanoSIMS-Derived Isotope Ratios: A Comprehensive Approach
Hryhoriy Stryhanyuk, Federica Calabrese, Steffen Kümmel, Florin Musat, Hans H. Richnow, Niculina Musat
Front Microbiol. 2018; 9: 2342. Published online 2018 Oct 3. doi: 10.3389/fmicb.2018.02342
PMCID:
PMC6178922
ArticlePDF–3.9M
11.
Genome-wide analysis of the FleQ direct regulon in Pseudomonas fluorescens F113 and Pseudomonas putida KT2440
Esther Blanco-Romero, Miguel Redondo-Nieto, Francisco Martínez-Granero, Daniel Garrido-Sanz, Maria Isabel Ramos-González, Marta Martín, Rafael Rivilla
Sci Rep. 2018; 8: 13145. Published online 2018 Sep 3. doi: 10.1038/s41598-018-31371-z
PMCID:
PMC6120874
ArticlePDF–1.8M
12.
A Broad Spectrum Racemase in Pseudomonas putida KT2440 Plays a Key Role in Amino Acid Catabolism
Atanas D. Radkov, Luke A. Moe
Front Microbiol. 2018; 9: 1343. Published online 2018 Jun 29. doi: 10.3389/fmicb.2018.01343
PMCID:
PMC6034422
ArticlePDF–879K
13.
Conversion of levoglucosan and cellobiosan by Pseudomonas putida KT2440
Jeffrey G. Linger, Sarah E. Hobdey, Mary Ann Franden, Emily M. Fulk, Gregg T. Beckham
Metab Eng Commun. 2016 Dec; 3: 24–29. Published online 2016 Feb 2. doi: 10.1016/j.meteno.2016.01.005
PMCID:
PMC5779712
ArticlePDF–1009K
14.
Alpine soil carbon is vulnerable to rapid microbial decomposition under climate cooling
Linwei Wu, Yunfeng Yang, Shiping Wang, Haowei Yue, Qiaoyan Lin, Yigang Hu, Zhili He, Joy D Van Nostrand, Lauren Hale, Xiangzhen Li, Jack A Gilbert, Jizhong Zhou
ISME J. 2017 Sep; 11(9): 2102–2111. Published online 2017 May 23. doi: 10.1038/ismej.2017.75
PMCID:
PMC5563962
ArticlePDF–273K
15.
Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics
Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, Vitor A. P. Martins dos Santos, Maria Suarez-Diez
Version 3. F1000Res. 2016; 5: 1987. Published online 2017 Jun 27. doi: 10.12688/f1000research.9416.3
PMCID:
PMC5031134
ArticlePDF–5.2M
16.
Genome-wide gene order distances support clustering the gram-positive bacteria
Christopher H. House, Matteo Pellegrini, Sorel T. Fitz-Gibbon
Front Microbiol. 2014; 5: 785. Published online 2015 Jan 20. doi: 10.3389/fmicb.2014.00785
PMCID:
PMC4299520
ArticlePDF–8.7M
17.
Whole Genome Sequencing and Analysis of Plant Growth Promoting Bacteria Isolated from the Rhizosphere of Plantation Crops Coconut, Cocoa and Arecanut
Alka Gupta, Murali Gopal, George V. Thomas, Vinu Manikandan, John Gajewski, George Thomas, Somasekar Seshagiri, Stephan C. Schuster, Preeti Rajesh, Ravi Gupta
PLoS One. 2014; 9(8): e104259. Published online 2014 Aug 27. doi: 10.1371/journal.pone.0104259
PMCID:
PMC4146471
ArticlePDF–2.1M
18.
Identification of glutamate ABC-Transporter component in Clostridium perfringens as a putative drug target
Bharti Bhatia, Sanket Singh Ponia, Amit Kumar Solanki, Aparna Dixit, Lalit C Garg
Bioinformation. 2014; 10(7): 401–405. Published online 2014 Jul 22. doi: 10.6026/97320630010401
PMCID:
PMC4135286
ArticlePDF–624K
19.
Protein as Chemical Cue: Non-Nutritional Growth Enhancement by Exogenous Protein in Pseudomonas putida KT2440
Hiren Joshi, Rachna Dave, Vayalam P. Venugopalan
PLoS One. 2014; 9(8): e103730. Published online 2014 Aug 12. doi: 10.1371/journal.pone.0103730
PMCID:
PMC4130607
ArticlePDF–1.7M
20.
Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms
Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés
Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869
PMCID:
PMC3927607
ArticlePDF–2.0M

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