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Select item 70262021.

Binomial nomenclature for virus species: a consultation

Stuart G. Siddell, Peter J. Walker, Elliot J. Lefkowitz, Arcady R. Mushegian, Bas E. Dutilh, Balázs Harrach, Robert L. Harrison, Sandra Junglen, Nick J. Knowles, Andrew M. Kropinski, Mart Krupovic, Jens H. Kuhn, Max L. Nibert, Luisa Rubino, Sead Sabanadzovic, Peter Simmonds, Arvind Varsani, Francisco Murilo Zerbini, Andrew J. Davison

Arch Virol. 2020; 165(2): 519–525. Published online 2019 Dec 3. doi: 10.1007/s00705-019-04477-6

Correction in:: Arch Virol. 2020; 165(5): 1263–1264.

PMCID:: PMC7026202

Abstract Article PDF–628K

Select item 69934872.

Analysis of viral diversity in stool samples from infants and children with acute gastroenteritis in Kuwait using Metagenomics approach

Hawraa Adel Mohammad, Nada Mohammed Madi, Widad Al-Nakib

Virol J. 2020; 17: 10. Published online 2020 Jan 30. doi: 10.1186/s12985-020-1287-5

PMCID:: PMC6993487

Abstract Article PDF–1.0M

Select item 69500853.

Pediatric Infections by Human mastadenovirus C Types 2, 89, and a Recombinant Type Detected in Japan between 2011 and 2018

Kenichiro Takahashi, Gabriel Gonzalez, Masaaki Kobayashi, Nozomu Hanaoka, Michael J. Carr, Masami Konagaya, Naomi Nojiri, Miki Ogi, Tsuguto Fujimoto

Viruses. 2019 Dec; 11(12): 1131. Published online 2019 Dec 6. doi: 10.3390/v11121131

PMCID:: PMC6950085

Abstract Article PDF–3.1M

Select item 67792664.

Human virome in nasopharynx and tracheal secretion samples

Larissa da Costa Souza, Rosana Blawid, João Marcos Fagundes Silva, Tatsuya Nagata

Mem Inst Oswaldo Cruz. 2019; 114: e190198. Published online 2019 Oct 3. doi: 10.1590/0074-02760190198

PMCID:: PMC6779266

Abstract Article PDF–351K

Select item 67308575.

A general approach for predicting protein epitopes targeted by antibody repertoires using whole proteomes

Michael L. Paull, Tim Johnston, Kelly N. Ibsen, Joel D. Bozekowski, Patrick S. Daugherty

PLoS One. 2019; 14(9): e0217668. Published online 2019 Sep 6. doi: 10.1371/journal.pone.0217668

PMCID:: PMC6730857

Abstract Article PDF–2.2M

Select item 67003546.

Pathogenicity of an FAdV-4 isolate to chickens and its genomic analysis

Kai-kun Mo, Chen-fei Lyu, Shang-shang Cao, Xia Li, Gang Xing, Yan Yan, Xiao-juan Zheng, Min Liao, Ji-yong Zhou

J Zhejiang Univ Sci B. 2019 Sep; 20(9): 740–752. doi: 10.1631/jzus.B1900070

PMCID:: PMC6700354

Abstract Article PDF–5.7M

Select item 66031327.

Adenovirus Isolated From a Cat Is Related to Human Adenovirus 1

Joseph Ongrádi, Louise G. Chatlynne, Katalin Réka Tarcsai, Balázs Stercz, Béla Lakatos, Patricia Pring-Åkerblom, Donald Gooss, Sr., Károly Nagy, Dharam V. Ablashi

Front Microbiol. 2019; 10: 1430. Published online 2019 Jun 25. doi: 10.3389/fmicb.2019.01430

PMCID:: PMC6603132

Abstract Article PDF–2.3M

Select item 64663678.

Chemical and Biological Components of Urban Aerosols in Africa: Current Status and Knowledge Gaps

Egide Kalisa, Stephen Archer, Edward Nagato, Elias Bizuru, Kevin Lee, Ning Tang, Stephen Pointing, Kazuichi Hayakawa, Donnabella Lacap-Bugler

Int J Environ Res Public Health. 2019 Mar; 16(6): 941. Published online 2019 Mar 15. doi: 10.3390/ijerph16060941

PMCID:: PMC6466367

Abstract Article PDF–1.4M

Select item 63849559.

A method to identify respiratory virus infections in clinical samples using next-generation sequencing

Talia Kustin, Guy Ling, Sivan Sharabi, Daniela Ram, Nehemya Friedman, Neta Zuckerman, Efrat Dahan Bucris, Aharona Glatman-Freedman, Adi Stern, Michal Mandelboim

Sci Rep. 2019; 9: 2606. Published online 2019 Feb 22. doi: 10.1038/s41598-018-37483-w

PMCID:: PMC6384955

Abstract Article PDF–1.2M

Select item 637936110.

Recombination analysis of Human mastadenovirus C whole genomes

Pierre Rivailler, Naiying Mao, Zhen Zhu, Wenbo Xu

Sci Rep. 2019; 9: 2182. Published online 2019 Feb 18. doi: 10.1038/s41598-019-38719-z

PMCID:: PMC6379361

Abstract Article PDF–1.6M

Select item 633255411.

Viral species richness and composition in young children with loose or watery stool in Ethiopia

Kristen Aiemjoy, Eda Altan, Solomon Aragie, Dionna M. Fry, Tung G. Phan, Xutao Deng, Melsew Chanyalew, Zerihun Tadesse, E. Kelly Callahan, Eric Delwart, Jeremy D. Keenan

BMC Infect Dis. 2019; 19: 53. Published online 2019 Jan 14. doi: 10.1186/s12879-019-3674-3

PMCID:: PMC6332554

Abstract Article PDF–1.3M

Select item 633109512.

Metagenomic analysis of viruses in toilet waste from long distance flights—A new procedure for global infectious disease surveillance

Mathis Hjort Hjelmsø, Sarah Mollerup, Randi Holm Jensen, Carlotta Pietroni, Oksana Lukjancenko, Anna Charlotte Schultz, Frank M. Aarestrup, Anders Johannes Hansen

PLoS One. 2019; 14(1): e0210368. Published online 2019 Jan 14. doi: 10.1371/journal.pone.0210368

PMCID:: PMC6331095

Abstract Article PDF–1.8M

Select item 632814413.

Screening human cell lines for viral infections applying RNA-Seq data analysis

Cord C. Uphoff, Claudia Pommerenke, Sabine A. Denkmann, Hans G. Drexler

PLoS One. 2019; 14(1): e0210404. Published online 2019 Jan 10. doi: 10.1371/journal.pone.0210404

PMCID:: PMC6328144

Abstract Article PDF–1.5M

Select item 625886014.

Detection of Viruses in Clinical Samples by Use of Metagenomic Sequencing and Targeted Sequence Capture

Kristine M. Wylie, Todd N. Wylie, Richard Buller, Brandi Herter, Maria T. Cannella, Gregory A. Storch

J Clin Microbiol. 2018 Dec; 56(12): e01123-18. Prepublished online 2018 Sep 19. Published online 2018 Nov 27. doi: 10.1128/JCM.01123-18

PMCID:: PMC6258860

Abstract Article PDF–215K

Select item 620997415.

A Metagenomic Approach to Evaluating Surface Water Quality in Haiti

Monika A. Roy, Jean M. Arnaud, Paul M. Jasmin, Steve Hamner, Nur A. Hasan, Rita R. Colwell, Timothy E. Ford

Int J Environ Res Public Health. 2018 Oct; 15(10): 2211. Published online 2018 Oct 10. doi: 10.3390/ijerph15102211

PMCID:: PMC6209974

Abstract Article PDF–3.0M

Select item 618910016.

Tridimensional infiltration of DNA viruses into the host genome shows preferential contact with active chromatin

Pierrick Moreau, Axel Cournac, Gianna Aurora Palumbo, Martial Marbouty, Shogofa Mortaza, Agnes Thierry, Stefano Cairo, Marc Lavigne, Romain Koszul, Christine Neuveut

Nat Commun. 2018; 9: 4268. Published online 2018 Oct 15. doi: 10.1038/s41467-018-06739-4

PMCID:: PMC6189100

Abstract Article PDF–6.3M

Select item 603093517.

IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding

Bálint Mészáros, Gábor Erdős, Zsuzsanna Dosztányi

Nucleic Acids Res. 2018 Jul 2; 46(Web Server issue): W329–W337. Published online 2018 Jun 1. doi: 10.1093/nar/gky384

PMCID:: PMC6030935

Abstract Article PDF–3.0M

Select item 599619318.

viGEN: An Open Source Pipeline for the Detection and Quantification of Viral RNA in Human Tumors

Krithika Bhuvaneshwar, Lei Song, Subha Madhavan, Yuriy Gusev

Front Microbiol. 2018; 9: 1172. Published online 2018 Jun 5. doi: 10.3389/fmicb.2018.01172

PMCID:: PMC5996193

Abstract Article PDF–789K

Select item 596975019.

Systematic detection of positive selection in the human-pathogen interactome and lasting effects on infectious disease susceptibility

Erik Corona, Liuyang Wang, Dennis Ko, Chirag J. Patel

PLoS One. 2018; 13(5): e0196676. Published online 2018 May 25. doi: 10.1371/journal.pone.0196676

PMCID:: PMC5969750

Abstract Article PDF–5.0M

Select item 576570420.

Persistent mammalian orthoreovirus, coxsackievirus and adenovirus co-infection in a child with a primary immunodeficiency detected by metagenomic sequencing: a case report

Dagmara W. Lewandowska, Riccarda Capaul, Seraina Prader, Osvaldo Zagordi, Fabienne-Desirée Geissberger, Martin Kügler, Marcus Knorr, Christoph Berger, Tayfun Güngör, Janine Reichenbach, Cyril Shah, Jürg Böni, Andrea Zbinden, Alexandra Trkola, Jana Pachlopnik Schmid, Michael Huber

BMC Infect Dis. 2018; 18: 33. Published online 2018 Jan 11. doi: 10.1186/s12879-018-2946-7