PMC Links for Taxonomy (Select 1096) - PMC

Samuel M. Luedin, Nicole Liechti, Raymond P. Cox, Francesco Danza, Niels-Ulrik Frigaard, Nicole R. Posth, Joël F. Pothier, Samuele Roman, Nicola Storelli, Matthias Wittwer, Mauro Tonolla

Sci Rep. 2019; 9: 1936. Published online 2019 Feb 13. doi: 10.1038/s41598-018-38202-1

PMCID:: PMC6374484

Article PDF–2.7M

Select item 63274944.

CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

Alexandra Zaharia, Bernard Labedan, Christine Froidevaux, Alain Denise

BMC Bioinformatics. 2019; 20: 19. Published online 2019 Jan 10. doi: 10.1186/s12859-018-2542-2

PMCID:: PMC6327494

Article PDF–1.5M

Select item 63062055.

Bacterial diversity in the water column of meromictic Lake Cadagno and evidence for seasonal dynamics

Francesco Danza, Damiana Ravasi, Nicola Storelli, Samuele Roman, Samuel Lüdin, Matthieu Bueche, Mauro Tonolla

PLoS One. 2018; 13(12): e0209743. Published online 2018 Dec 26. doi: 10.1371/journal.pone.0209743

PMCID:: PMC6306205

Article PDF–2.1M

Select item 62992186.

The Expanded Universe of Prokaryotic Argonaute Proteins

Sergei Ryazansky, Andrey Kulbachinskiy, Alexei A. Aravin

mBio. 2018 Nov-Dec; 9(6): e01935-18. Published online 2018 Dec 18. doi: 10.1128/mBio.01935-18

PMCID:: PMC6299218

Article PDF–3.9M

Select item 62821987.

Physiological Studies of Chlorobiaceae Suggest that Bacillithiol Derivatives Are the Most Widespread Thiols in Bacteria

Jennifer Hiras, Sunil V. Sharma, Vidhyavathi Raman, Ryan A. J. Tinson, Miriam Arbach, Dominic F. Rodrigues, Javiera Norambuena, Chris J. Hamilton, Thomas E. Hanson

mBio. 2018 Nov-Dec; 9(6): e01603-18. Published online 2018 Nov 27. doi: 10.1128/mBio.01603-18

PMCID:: PMC6282198

Article PDF–2.2M

Select item 59344918.

Low-Light Anoxygenic Photosynthesis and Fe-S-Biogeochemistry in a Microbial Mat

Sebastian Haas, Dirk de Beer, Judith M. Klatt, Artur Fink, Rebecca McCauley Rench, Trinity L. Hamilton, Volker Meyer, Brian Kakuk, Jennifer L. Macalady

Front Microbiol. 2018; 9: 858. Published online 2018 Apr 27. doi: 10.3389/fmicb.2018.00858

PMCID:: PMC5934491

Article PDF–4.0M

Select item 59303769.

Isoprenoid Quinones Resolve the Stratification of Redox Processes in a Biogeochemical Continuum from the Photic Zone to Deep Anoxic Sediments of the Black Sea

Kevin W. Becker, Felix J. Elling, Jan M. Schröder, Julius S. Lipp, Tobias Goldhammer, Matthias Zabel, Marcus Elvert, Jörg Overmann, Kai-Uwe Hinrichs

Appl Environ Microbiol. 2018 May 15; 84(10): e02736-17. Prepublished online 2018 Mar 9. Published online 2018 May 1. doi: 10.1128/AEM.02736-17

PMCID:: PMC5930376

Article PDF–1.9M

Select item 577222210.

Differential RNA Sequencing Implicates Sulfide as the Master Regulator of S⁰ Metabolism in Chlorobaculum tepidum and Other Green Sulfur Bacteria

Jacob M. Hilzinger, Vidhyavathi Raman, Kevin E. Shuman, Brian J. Eddie, Thomas E. Hanson

Appl Environ Microbiol. 2018 Feb 1; 84(3): e01966-17. Prepublished online 2017 Nov 17. Published online 2018 Jan 17. doi: 10.1128/AEM.01966-17

PMCID:: PMC5772222

Article PDF–3.3M

Select item 573199511.

Dynamic cellular complexity of anoxygenic phototrophic sulfur bacteria in the chemocline of meromictic Lake Cadagno

Francesco Danza, Nicola Storelli, Samuele Roman, Samuel Lüdin, Mauro Tonolla

PLoS One. 2017; 12(12): e0189510. Published online 2017 Dec 15. doi: 10.1371/journal.pone.0189510

PMCID:: PMC5731995

Article PDF–3.4M

Select item 565544612.

Kinetic characterization of Vibrio cholerae ApbE: Substrate specificity and regulatory mechanisms

Xuan Fang, Pingdong Liang, Daniel Alexander Raba, Mónica Rosas-Lemus, Srinivas Chakravarthy, Karina Tuz, Oscar Juárez

PLoS One. 2017; 12(10): e0186805. Published online 2017 Oct 24. doi: 10.1371/journal.pone.0186805

PMCID:: PMC5655446

Article PDF–7.7M

Select item 557121213.

Metagenomic analysis reveals a green sulfur bacterium as a potential coral symbiont

Lin Cai, Guowei Zhou, Ren-Mao Tian, Haoya Tong, Weipeng Zhang, Jin Sun, Wei Ding, Yue Him Wong, James Y. Xie, Jian-Wen Qiu, Sheng Liu, Hui Huang, Pei-Yuan Qian

Sci Rep. 2017; 7: 9320. Published online 2017 Aug 24. doi: 10.1038/s41598-017-09032-4

PMCID:: PMC5571212

Article PDF–3.3M

Select item 553371214.

Dissimilatory Nitrate Reduction to Ammonium in the Yellow River Estuary: Rates, Abundance, and Community Diversity

Cuina Bu, Yu Wang, Chenghao Ge, Hafiz Adeel Ahmad, Baoyu Gao, Shou-Qing Ni

Sci Rep. 2017; 7: 6830. Published online 2017 Jul 28. doi: 10.1038/s41598-017-06404-8

PMCID:: PMC5533712

Article PDF–3.5M

Select item 549847615.

Nutrient Acquisition and the Metabolic Potential of Photoferrotrophic Chlorobi

Katharine J. Thompson, Rachel L. Simister, Aria S. Hahn, Steven J. Hallam, Sean A. Crowe

Front Microbiol. 2017; 8: 1212. Published online 2017 Jul 6. doi: 10.3389/fmicb.2017.01212

PMCID:: PMC5498476

Article PDF–4.6M

Select item 548135116.

Phylogenetic Tracings of Proteome Size Support the Gradual Accretion of Protein Structural Domains and the Early Origin of Viruses from Primordial Cells

Arshan Nasir, Kyung Mo Kim, Gustavo Caetano-Anollés

Front Microbiol. 2017; 8: 1178. Published online 2017 Jun 23. doi: 10.3389/fmicb.2017.01178

PMCID:: PMC5481351

Article PDF–3.0M

Select item 544426317.

Identification of a chondroitin synthase from an unexpected source, the green sulfur bacterium Chlorobium phaeobacteroides

Dixy E Green, Paul L DeAngelis

Glycobiology. 2017 May; 27(5): 469–476. Published online 2017 Feb 23. doi: 10.1093/glycob/cwx008

PMCID:: PMC5444263

Article PDF–634K

Select item 540534818.

Mining of Microbial Genomes for the Novel Sources of Nitrilases

Nikhil Sharma, Neerja Thakur, Tilak Raj, Savitri, Tek Chand Bhalla

Biomed Res Int. 2017; 2017: 7039245. Published online 2017 Apr 12. doi: 10.1155/2017/7039245

PMCID:: PMC5405348

Article PDF–700K

Select item 527047919.

BciD Is a Radical S-Adenosyl-l-methionine (SAM) Enzyme That Completes Bacteriochlorophyllide e Biosynthesis by Oxidizing a Methyl Group into a Formyl Group at C-7

Jennifer L. Thweatt, Bryan H. Ferlez, John H. Golbeck, Donald A. Bryant

J Biol Chem. 2017 Jan 27; 292(4): 1361–1373. Published online 2016 Dec 19. doi: 10.1074/jbc.M116.767665

PMCID:: PMC5270479

Article PDF–1.4M

Select item 516772920.

Genome-Based Taxonomic Classification of Bacteroidetes

Richard L. Hahnke, Jan P. Meier-Kolthoff, Marina García-López, Supratim Mukherjee, Marcel Huntemann, Natalia N. Ivanova, Tanja Woyke, Nikos C. Kyrpides, Hans-Peter Klenk, Markus Göker

Front Microbiol. 2016; 7: 2003. Published online 2016 Dec 20. doi: 10.3389/fmicb.2016.02003