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Links from Protein

Items: 17

1.
The nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin
Assaf Zemach, M. Yvonne Kim, Ping-Hung Hsieh, Devin Coleman-Derr, Leor Eshed-Williams, Ka Thao, Stacey L. Harmer, Daniel Zilberman
Cell. Author manuscript; available in PMC 2014 May 27.
Published in final edited form as: Cell. 2013 Mar 28; 153(1): 193–205. doi: 10.1016/j.cell.2013.02.033
PMCID:
PMC4035305
AbstractArticlePDF–3.2M
2.
SRA/SET domain-containing proteins link RNA polymerase V occupancy to DNA methylation
Lianna M. Johnson, Jiamu Du, Christopher J. Hale, Sylvain Bischof, Suhua Feng, Ramakrishna K. Chodavarapu, Xuehua Zhong, Giuseppe Marson, Matteo Pellegrini, David J. Segal, Dinshaw J. Patel, Steven E. Jacobsen
Nature. Author manuscript; available in PMC 2014 Sep 6.
Published in final edited form as: Nature. 2014 Mar 6; 507(7490): 124–128. Published online 2014 Jan 22. doi: 10.1038/nature12931
Correction in:
Nature. 2017 Feb 8
PMCID:
PMC3963826
AbstractArticlePDF–2.8M
3.
The Ability to Form Homodimers Is Essential for RDM1 to Function in RNA-Directed DNA Methylation
Taku Sasaki, Zdravko J. Lorković, Shih-Chieh Liang, Antonius J. M. Matzke, Marjori Matzke
PLoS One. 2014; 9(2): e88190. Published online 2014 Feb 3. doi: 10.1371/journal.pone.0088190
PMCID:
PMC3912163
AbstractArticlePDF–1.5M
4.
The SET Domain Proteins SUVH2 and SUVH9 Are Required for Pol V Occupancy at RNA-Directed DNA Methylation Loci
Zhang-Wei Liu, Chang-Rong Shao, Cui-Jun Zhang, Jin-Xing Zhou, Su-Wei Zhang, Lin Li, She Chen, Huan-Wei Huang, Tao Cai, Xin-Jian He
PLoS Genet. 2014 Jan; 10(1): e1003948. Published online 2014 Jan 22. doi: 10.1371/journal.pgen.1003948
PMCID:
PMC3898904
AbstractArticlePDF–3.2M
5.
Genome-Wide Comparative In Silico Analysis of the RNA Helicase Gene Family in Zea mays and Glycine max: A Comparison with Arabidopsis and Oryza sativa
Ruirui Xu, Shizhong Zhang, Jinguang Huang, Chengchao Zheng
PLoS One. 2013; 8(11): e78982. Published online 2013 Nov 12. doi: 10.1371/journal.pone.0078982
Correction in:
PLoS One. 2020; 15(10): e0240759.
PMCID:
PMC3827086
AbstractArticlePDF–2.4M
6.
RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats
Tzuu-fen Lee, Sai Guna Ranjan Gurazada, Jixian Zhai, Shengben Li, Stacey A. Simon, Marjori A. Matzke, Xuemei Chen, Blake C. Meyers
Epigenetics. 2012 Jul 1; 7(7): 781–795. Published online 2012 Jul 1. doi: 10.4161/epi.20290
PMCID:
PMC3679228
AbstractArticlePDF–3.1M
7.
DDR complex facilitates global association of RNA Polymerase V to promoters and evolutionarily young transposons
Xuehua Zhong, Christopher J. Hale, Julie A. Law, Lianna M. Johnson, Suhua Feng, Andy Tu, Steven E. Jacobsen
Nat Struct Mol Biol. Author manuscript; available in PMC 2013 Mar 1.
Published in final edited form as: Nat Struct Mol Biol. 2012 Sep; 19(9): 870–875. Published online 2012 Aug 5. doi: 10.1038/nsmb.2354
PMCID:
PMC3443314
AbstractArticlePDF–1.9M
8.
The RNA Silencing Enzyme RNA Polymerase V Is Required for Plant Immunity
Ana López, Vicente Ramírez, Javier García-Andrade, Victor Flors, Pablo Vera
PLoS Genet. 2011 Dec; 7(12): e1002434. Published online 2011 Dec 29. doi: 10.1371/journal.pgen.1002434
PMCID:
PMC3248562
AbstractArticlePDF–750K
9.
DRD1-Pol V-dependent self-silencing of an exogenous silencer restricts non-cell-autonomous silencing of an endogenous target gene
Li Dong, Meng Liu, Yuan-Yuan Fang, Jian-Hua Zhao, Xiang-Feng He, Xiao-Bao Ying, Yi-Yue Zhang, Qi Xie, Nam-Hai Chua, Hui-Shan Guo
Plant J. Author manuscript; available in PMC 2012 Nov 1.
Published in final edited form as: Plant J. 2011 Nov; 68(4): 633–645. Published online 2011 Aug 30. doi: 10.1111/j.1365-313X.2011.04714.x
PMCID:
PMC3204326
AbstractArticlePDF–1.8M
10.
A protein complex required for polymerase V transcripts and RNA-directed DNA methylation in plants
Julie A. Law, Israel Ausin, Lianna M. Johnson, Ajay A. Vashisht, Jian-Kang Zhu, James A. Wohlschlegel, Steven E. Jacobsen
Curr Biol. Author manuscript; available in PMC 2010 Nov 4.
Published in final edited form as: Curr Biol. 2010 May 25; 20(10): 951–956. Published online 2010 Apr 22. doi: 10.1016/j.cub.2010.03.062
PMCID:
PMC2972704
AbstractArticlePDF–509K
11.
RNA Polymerase V Functions in Arabidopsis Interphase Heterochromatin Organization Independently of the 24-nt siRNA-Directed DNA Methylation Pathway
Olga Pontes, Pedro Costa-Nunes, Paul Vithayathil, Craig S. Pikaard
Mol Plant. 2009 Jul; 2(4): 700–710. Published online 2009 Mar 24. doi: 10.1093/mp/ssp006
PMCID:
PMC2902898
AbstractArticlePDF–953K
12.
NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation
Xin-Jian He, Yi-Feng Hsu, Olga Pontes, Jianhua Zhu, Jian Lu, Ray A. Bressan, Craig Pikaard, Co-Shine Wang, Jian-Kang Zhu
Genes Dev. 2009 Feb 1; 23(3): 318–330. doi: 10.1101/gad.1765209
PMCID:
PMC2648547
AbstractArticlePDF–1.4M
13.
Noncoding transcription by RNA Polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
Andrzej T. Wierzbicki, Jeremy R. Haag, Craig S. Pikaard
Cell. Author manuscript; available in PMC 2009 Nov 14.
Published in final edited form as: Cell. 2008 Nov 14; 135(4): 635–648. doi: 10.1016/j.cell.2008.09.035
PMCID:
PMC2602798
AbstractArticlePDF–3.7M
14.
Involvement of the Arabidopsis SWI2/SNF2 Chromatin Remodeling Gene Family in DNA Damage Response and Recombination
Hezi Shaked, Naomi Avivi-Ragolsky, Avraham A. Levy
Genetics. 2006 Jun; 173(2): 985–994. doi: 10.1534/genetics.105.051664
PMCID:
PMC1526515
AbstractArticlePDF–827K
15.
Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis
Bruno Huettel, Tatsuo Kanno, Lucia Daxinger, Werner Aufsatz, Antonius J M Matzke, Marjori Matzke
EMBO J. 2006 Jun 21; 25(12): 2828–2836. Published online 2006 May 25. doi: 10.1038/sj.emboj.7601150
PMCID:
PMC1500864
AbstractArticlePDF–256K
16.
RNAi, DRD1, and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in Arabidopsis
Simon W.-L Chan, Ian R Henderson, Xiaoyu Zhang, Govind Shah, Jason S.-C Chien, Steven E Jacobsen
PLoS Genet. 2006 Jun; 2(6): e83. Published online 2006 Jun 2. doi: 10.1371/journal.pgen.0020083
PMCID:
PMC1472700
AbstractArticlePDF–362K
17.
A SNF2-like protein facilitates dynamic control of DNA methylation
Tatsuo Kanno, Werner Aufsatz, Estelle Jaligot, Michael Florian Mette, Marjori Matzke, Antonius J M Matzke
EMBO Rep. 2005 Jul; 6(7): 649–655. Published online 2005 Jun 10. doi: 10.1038/sj.embor.7400446
PMCID:
PMC1369108
AbstractArticlePDF–147K

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