PMC Links for Nucleotide (Select 307128764) - PMC

Select item 31330541.

Genome Sequence of the Plant-Pathogenic Bacterium Dickeya dadantii 3937

Jeremy D. Glasner, Ching-Hong Yang, Sylvie Reverchon, Nicole Hugouvieux-Cotte-Pattat, Guy Condemine, Jean-Pierre Bohin, Frédérique Van Gijsegem, Shihui Yang, Thierry Franza, Dominique Expert, Guy Plunkett, III, Michael J. San Francisco, Amy O. Charkowski, Béatrice Py, Kenneth Bell, Lise Rauscher, Pablo Rodriguez-Palenzuela, Ariane Toussaint, Maria C. Holeva, Sheng Yang He, Vanessa Douet, Martine Boccara, Carlos Blanco, Ian Toth, Bradley D. Anderson, Bryan S. Biehl, Bob Mau, Sarah M. Flynn, Frédéric Barras, Magdalen Lindeberg, Paul R. J. Birch, Shinji Tsuyumu, Xiangyang Shi, Michael Hibbing, Mee-Ngan Yap, Mathilde Carpentier, Elie Dassa, Masahiro Umehara, Jihyun F. Kim, Michael Rusch, Pritin Soni, George F. Mayhew, Derrick E. Fouts, Steven R. Gill, Frederick R. Blattner, Noel T. Keen, Nicole T. Perna

J Bacteriol. 2011 Apr; 193(8): 2076–2077. doi: 10.1128/JB.01513-10

PMCID:: PMC3133054

Abstract Article PDF–42K

Select item 69955242.

Genomic, Transcriptomic and Enzymatic Insight into Lignocellulolytic System of a Plant Pathogen Dickeya sp. WS52 to Digest Sweet Pepper and Tomato Stalk

Ying-Jie Yang, Wei Lin, Raghvendra Pratap Singh, Qian Xu, Zhihou Chen, Yuan Yuan, Ping Zou, Yiqiang Li, Chengsheng Zhang

Biomolecules. 2019 Dec; 9(12): 753. Published online 2019 Nov 20. doi: 10.3390/biom9120753

PMCID:: PMC6995524

Abstract Article PDF–2.7M

Select item 67359043.

APERO: a genome-wide approach for identifying bacterial small RNAs from RNA-Seq data

Simon Leonard, Sam Meyer, Stephan Lacour, William Nasser, Florence Hommais, Sylvie Reverchon

Nucleic Acids Res. 2019 Sep 5; 47(15): e88. Published online 2019 May 31. doi: 10.1093/nar/gkz485

PMCID:: PMC6735904

Abstract Article PDF–1.5M

Select item 66952004.

Cell-length heterogeneity: a population-level solution to growth/virulence trade-offs in the plant pathogen Dickeya dadantii

Zhouqi Cui, Ching-Hong Yang, Roshni R. Kharadi, Xiaochen Yuan, George W. Sundin, Lindsay R. Triplett, Jie Wang, Quan Zeng

PLoS Pathog. 2019 Aug; 15(8): e1007703. Published online 2019 Aug 5. doi: 10.1371/journal.ppat.1007703

PMCID:: PMC6695200

Abstract Article PDF–8.2M

Select item 65908885.

Development of a robust, field-deployable loop-mediated isothermal amplification (LAMP) assay for specific detection of potato pathogen Dickeya dianthicola targeting a unique genomic region

Jordie Ocenar, Dario Arizala, Gamze Boluk, Upasana Dhakal, Samudra Gunarathne, Sujan Paudel, Shefali Dobhal, Mohammad Arif

PLoS One. 2019; 14(6): e0218868. Published online 2019 Jun 24. doi: 10.1371/journal.pone.0218868

PMCID:: PMC6590888

Abstract Article PDF–1.8M

Select item 65823486.

Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling

Bilal El Houdaigui, Raphaël Forquet, Thomas Hindré, Dominique Schneider, William Nasser, Sylvie Reverchon, Sam Meyer

Nucleic Acids Res. 2019 Jun 20; 47(11): 5648–5657. Published online 2019 Apr 24. doi: 10.1093/nar/gkz300

PMCID:: PMC6582348

Abstract Article PDF–1.9M

Select item 64120557.

Genomic analysis of bacteria in the Acute Oak Decline pathobiome

James Doonan, Sandra Denman, Justin A. Pachebat, James E. McDonald

Microb Genom. 2019 Jan; 5(1): e000240. Published online 2019 Jan 8. doi: 10.1099/mgen.0.000240

PMCID:: PMC6412055

Abstract Article PDF–2.3M

Select item 63856408.

May the Phage be With You? Prophage-Like Elements in the Genomes of Soft Rot Pectobacteriaceae: Pectobacterium spp. and Dickeya spp.

Robert Czajkowski

Front Microbiol. 2019; 10: 138. Published online 2019 Feb 14. doi: 10.3389/fmicb.2019.00138

PMCID:: PMC6385640

Abstract Article PDF–6.1M

Select item 62060999.

Genome-informed diagnostics for specific and rapid detection of Pectobacterium species using recombinase polymerase amplification coupled with a lateral flow device

Firas A. Ahmed, Adriana Larrea-Sarmiento, Anne M. Alvarez, Mohammad Arif

Sci Rep. 2018; 8: 15972. Published online 2018 Oct 29. doi: 10.1038/s41598-018-34275-0

PMCID:: PMC6206099

Abstract Article PDF–1.8M

Select item 449522010.

Living in an Extremely Polluted Environment: Clues from the Genome of Melanin-Producing Aeromonas salmonicida subsp. pectinolytica 34mel^T

María Elisa Pavan, Esteban E. Pavan, Nancy I. López, Laura Levin, M. Julia Pettinari

Appl Environ Microbiol. 2015 Aug; 81(15): 5235–5248. Prepublished online 2015 May 29. Published online 2015 Jul 7. doi: 10.1128/AEM.00903-15

PMCID:: PMC4495220

Abstract Article PDF–1.4M

Select item 383718311.

Draft Genome Sequences of 17 Isolates of the Plant Pathogenic Bacterium Dickeya

Leighton Pritchard, Sonia Humphris, Gerry S. Saddler, John G. Elphinstone, Minna Pirhonen, Ian K. Toth

Genome Announc. 2013 Nov-Dec; 1(6): e00978-13. Published online 2013 Nov 21. doi: 10.1128/genomeA.00978-13

PMCID:: PMC3837183

Abstract Article PDF–138K

Select item 354324212.

A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences

Fredrik Boulund, Anna Johnning, Mariana Buongermino Pereira, DG Joakim Larsson, Erik Kristiansson

BMC Genomics. 2012; 13: 695. Published online 2012 Dec 11. doi: 10.1186/1471-2164-13-695

PMCID:: PMC3543242

Abstract Article PDF–762K

Select item 341636213.

Production of the Antimicrobial Secondary Metabolite Indigoidine Contributes to Competitive Surface Colonization by the Marine Roseobacter Phaeobacter sp. Strain Y4I

W. Nathan Cude, Jason Mooney, Arash A. Tavanaei, Mary K. Hadden, Ashley M. Frank, Christopher A. Gulvik, Amanda L. May, Alison Buchan

Appl Environ Microbiol. 2012 Jul; 78(14): 4771–4780. doi: 10.1128/AEM.00297-12

PMCID:: PMC3416362

Abstract Article PDF–1.0M

Select item 333510214.

Quorum Sensing Signaling Molecules Produced by Reference and Emerging Soft-Rot Bacteria (Dickeya and Pectobacterium spp.)

Alexandre Crépin, Corinne Barbey, Amélie Beury-Cirou, Valérie Hélias, Laure Taupin, Sylvie Reverchon, William Nasser, Denis Faure, Alain Dufour, Nicole Orange, Marc Feuilloley, Karin Heurlier, Jean-François Burini, Xavier Latour

PLoS One. 2012; 7(4): e35176. Published online 2012 Apr 23. doi: 10.1371/journal.pone.0035176

PMCID:: PMC3335102

Abstract Article PDF–560K

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