PMC Links for Nucleotide (Select 20988043) - PMC

Select item 1392411.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Select item 53223362.

Classification of idiopathic interstitial pneumonias using anti–myxovirus resistance-protein 1 autoantibody

Yoshimasa Hamano, Hiroshi Kida, Shoichi Ihara, Akihiro Murakami, Masahiro Yanagawa, Ken Ueda, Osamu Honda, Lokesh P. Tripathi, Toru Arai, Masaki Hirose, Toshimitsu Hamasaki, Yukihiro Yano, Tetsuya Kimura, Yasuhiro Kato, Hyota Takamatsu, Tomoyuki Otsuka, Toshiyuki Minami, Haruhiko Hirata, Koji Inoue, Izumi Nagatomo, Yoshito Takeda, Masahide Mori, Hiroyoshi Nishikawa, Kenji Mizuguchi, Takashi Kijima, Masanori Kitaichi, Noriyuki Tomiyama, Yoshikazu Inoue, Atsushi Kumanogoh

Sci Rep. 2017; 7: 43201. Published online 2017 Feb 23. doi: 10.1038/srep43201

PMCID:: PMC5322336

Abstract Article PDF–1.2M

Select item 37497383.

Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis

Li Chen, Jianhua Xuan, Yue Wang, Eric P. Hoffman, Rebecca B. Riggins, Robert Clarke

Int J Comput Biol Drug Des. Author manuscript; available in PMC 2013 Aug 22.

Published in final edited form as: Int J Comput Biol Drug Des. 2009; 2(1): 1–20. doi: 10.1504/ijcbdd.2009.027582

PMCID:: PMC3749738

Abstract Article PDF–1.2M

Select item 36083944.

INTEGRATIVE NETWORK ANALYSIS TO IDENTIFY ABERRANT PATHWAY NETWORKS IN OVARIAN CANCER

LI CHEN, JIANHUA XUAN, JINGHUA GU, YUE WANG, ZHEN ZHANG, TIAN-LI WANG, IE-MING SHIH

Pac Symp Biocomput. Author manuscript; available in PMC 2013 Mar 26.

Published in final edited form as: Pac Symp Biocomput. 2012 : 31–42.

PMCID:: PMC3608394

Abstract Article PDF–2.0M

Select item 32141625.

Identifying cancer biomarkers by network-constrained support vector machines

Li Chen, Jianhua Xuan, Rebecca B Riggins, Robert Clarke, Yue Wang

BMC Syst Biol. 2011; 5: 161. Published online 2011 Oct 12. doi: 10.1186/1752-0509-5-161

PMCID:: PMC3214162

Abstract Article PDF–3.4M

Select item 31144106.

Applications of Different Weighting Schemes to Improve Pathway-Based Analysis

Sook S. Ha, Inyoung Kim, Yue Wang, Jianhua Xuan

Comp Funct Genomics. 2011; 2011: 463645. Published online 2011 May 22. doi: 10.1155/2011/463645

PMCID:: PMC3114410

Abstract Article PDF–796K

Select item 30729567.

Motif-guided sparse decomposition of gene expression data for regulatory module identification

Ting Gong, Jianhua Xuan, Li Chen, Rebecca B Riggins, Huai Li, Eric P Hoffman, Robert Clarke, Yue Wang

BMC Bioinformatics. 2011; 12: 82. Published online 2011 Mar 22. doi: 10.1186/1471-2105-12-82

PMCID:: PMC3072956

Abstract Article PDF–1.1M

Select item 29418718.

Frequent loss of heterozygosity at the interferon regulatory factor-1 gene locus in breast cancer

Luciane R. Cavalli, Rebecca B. Riggins, Antai Wang, Robert Clarke, Bassem R. Haddad

Breast Cancer Res Treat. Author manuscript; available in PMC 2011 May 1.

Published in final edited form as: Breast Cancer Res Treat. 2010 May; 121(1): 227–231. Published online 2009 Aug 21. doi: 10.1007/s10549-009-0509-8

PMCID:: PMC2941871

Abstract Article PDF–250K

Select item 29252939.

Interferon Gamma Restores Breast Cancer Sensitivity to Fulvestrant by Regulating STAT1, IRF1, NFκB, BCL2 Family Members, and Signaling to Caspase-dependent Apoptosis

Yanxia Ning, Rebecca B. Riggins, Jennifer E. Mulla, Haniee Chung, Alan Zwart, Robert Clarke

Mol Cancer Ther. Author manuscript; available in PMC 2011 May 1.

Published in final edited form as: Mol Cancer Ther. 2010 May; 9(5): 1274–1285. doi: 10.1158/1535-7163.MCT-09-1169

PMCID:: PMC2925293

Abstract Article PDF–748K

Select item 287200110.

Multilevel support vector regression analysis to identify condition-specific regulatory networks

Li Chen, Jianhua Xuan, Rebecca B. Riggins, Yue Wang, Eric P. Hoffman, Robert Clarke

Bioinformatics. 2010 Jun 1; 26(11): 1416–1422. Published online 2010 Apr 7. doi: 10.1093/bioinformatics/btq144

PMCID:: PMC2872001

Abstract Article PDF–342K

Select item 286549411.

Knowledge-guided gene ranking by coordinative component analysis

Chen Wang, Jianhua Xuan, Huai Li, Yue Wang, Ming Zhan, Eric P Hoffman, Robert Clarke

BMC Bioinformatics. 2010; 11: 162. Published online 2010 Mar 30. doi: 10.1186/1471-2105-11-162

PMCID:: PMC2865494

Abstract Article PDF–1.0M

Select item 275914812.

Gene Module Identification from Microarray Data Using Nonnegative Independent Component Analysis

Ting Gong, Jianhua Xuan, Chen Wang, Huai Li, Eric Hoffman, Robert Clarke, Yue Wang

Gene Regul Syst Bio. 2007; 1: 349–363. Published online 2008 Jan 15.

PMCID:: PMC2759148

Abstract Article PDF–1.2M

Select item 270164113.

ERRγ mediates Tamoxifen resistance in novel models of invasive lobular breast cancer

Rebecca B. Riggins, Jennifer P-J. Lan, Yuelin Zhu, Uwe Klimach, Alan Zwart, Luciane R. Cavalli, Bassem R. Haddad, Li Chen, Ting Gong, Jianhua Xuan, Stephen P. Ethier, Robert Clarke

Cancer Res. Author manuscript; available in PMC 2009 Nov 1.

Published in final edited form as: Cancer Res. 2008 Nov 1; 68(21): 8908–8917. doi: 10.1158/0008-5472.CAN-08-2669