PMC Links for Nucleotide (Select 110613622) - PMC

Select item 15504011.

Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a

Huan Nie, Fan Yang, Xiaobing Zhang, Jian Yang, Lihong Chen, Jing Wang, Zhaohui Xiong, Junping Peng, Lilian Sun, Jie Dong, Ying Xue, Xingye Xu, Shuxia Chen, Zhijian Yao, Yan Shen, Qi Jin

BMC Genomics. 2006; 7: 173. Published online 2006 Jul 6. doi: 10.1186/1471-2164-7-173

PMCID:: PMC1550401

Abstract Article PDF–483K

Select item 65855092.

In Silico Serotyping Based on Whole-Genome Sequencing Improves the Accuracy of Shigella Identification

Yun Wu, Henry K. Lau, Teresa Lee, David K. Lau, Justin Payne

Appl Environ Microbiol. 2019 Apr 1; 85(7): e00165-19. Prepublished online 2019 Feb 1. Published online 2019 Mar 22. doi: 10.1128/AEM.00165-19

PMCID:: PMC6585509

Abstract Article PDF–2.4M

Select item 51184333.

Wageha A. Awad, Evelyne Mann, Monika Dzieciol, Claudia Hess, Stephan Schmitz-Esser, Martin Wagner, Michael Hess

Front Cell Infect Microbiol. 2016; 6: 154. Published online 2016 Nov 22. doi: 10.3389/fcimb.2016.00154

PMCID:: PMC5118433

Abstract Article PDF–3.8M

Select item 43748494.

Distinct Mutations Led to Inactivation of Type 1 Fimbriae Expression in Shigella spp.

Verónica Bravo, Andrea Puhar, Philippe Sansonetti, Claude Parsot, Cecilia S. Toro

PLoS One. 2015; 10(3): e0121785. Published online 2015 Mar 26. doi: 10.1371/journal.pone.0121785

PMCID:: PMC4374849

Abstract Article PDF–957K

Select item 42298545.

RNA-seq analysis of the influence of anaerobiosis and FNR on Shigella flexneri

Marta Vergara-Irigaray, Maria C Fookes, Nicholas R Thomson, Christoph M Tang

BMC Genomics. 2014; 15: 438. Published online 2014 Jun 6. doi: 10.1186/1471-2164-15-438

PMCID:: PMC4229854

Abstract Article PDF–1.1M

Select item 39934956.

Genomic Portrait of the Evolution and Epidemic Spread of a Recently Emerged Multidrug-Resistant Shigella flexneri Clone in China

Nan Zhang, Ruiting Lan, Qiangzheng Sun, Jianping Wang, Yiting Wang, Jin Zhang, Deshan Yu, Wanfu Hu, Shoukui Hu, Hang Dai, Pengcheng Du, Haiyin Wang, Jianguo Xu

J Clin Microbiol. 2014 Apr; 52(4): 1119–1126. doi: 10.1128/JCM.02669-13

PMCID:: PMC3993495

Abstract Article PDF–276K

Select item 35864387.

A Pentaplex PCR Assay for the Detection and Differentiation of Shigella Species

Suvash Chandra Ojha, Chan Yean Yean, Asma Ismail, Kirnpal-Kaur Banga Singh

Biomed Res Int. 2013; 2013: 412370. Published online 2013 Feb 13. doi: 10.1155/2013/412370

PMCID:: PMC3586438

Abstract Article PDF–1.0M

Select item 32180368.

Gene Decay in Shigella as an Incipient Stage of Host-Adaptation

Ye Feng, Zhe Chen, Shu-Lin Liu

PLoS One. 2011; 6(11): e27754. Published online 2011 Nov 16. doi: 10.1371/journal.pone.0027754

PMCID:: PMC3218036

Abstract Article PDF–142K

Select item 30717309.

An Integrated Approach for Finding Overlooked Genes in Shigella

Junping Peng, Jian Yang, Qi Jin

PLoS One. 2011; 6(4): e18509. Published online 2011 Apr 5. doi: 10.1371/journal.pone.0018509

PMCID:: PMC3071730

Abstract Article PDF–197K

Select item 301785810.

High-throughput microarray technology in diagnostics of enterobacteria based on genome-wide probe selection and regression analysis

Torben Friedrich, Sven Rahmann, Wilfried Weigel, Wolfgang Rabsch, Angelika Fruth, Eliora Ron, Florian Gunzer, Thomas Dandekar, Jörg Hacker, Tobias Müller, Ulrich Dobrindt

BMC Genomics. 2010; 11: 591. Published online 2010 Oct 21. doi: 10.1186/1471-2164-11-591

PMCID:: PMC3017858

Abstract Article PDF–2.1M

Select item 297419211.

Comparison of 61 Sequenced Escherichia coli Genomes

Oksana Lukjancenko, Trudy M. Wassenaar, David W. Ussery

Microb Ecol. 2010; 60(4): 708–720. Published online 2010 Jul 11. doi: 10.1007/s00248-010-9717-3

PMCID:: PMC2974192

Abstract Article PDF–558K

Select item 293579112.

Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement

Andrew P Jackson, Gavin H Thomas, Julian Parkhill, Nicholas R Thomson

BMC Genomics. 2009; 10: 584. Published online 2009 Dec 7. doi: 10.1186/1471-2164-10-584

PMCID:: PMC2935791

Abstract Article PDF–1.7M

Select item 280835713.

Complete Genome Sequence and Comparative Metabolic Profiling of the Prototypical Enteroaggregative Escherichia coli Strain 042

Roy R. Chaudhuri, Mohammed Sebaihia, Jon L. Hobman, Mark A. Webber, Denisse L. Leyton, Martin D. Goldberg, Adam F. Cunningham, Anthony Scott-Tucker, Paul R. Ferguson, Christopher M. Thomas, Gad Frankel, Christoph M. Tang, Edward G. Dudley, Ian S. Roberts, David A. Rasko, Mark J. Pallen, Julian Parkhill, James P. Nataro, Nicholas R. Thomson, Ian R. Henderson

PLoS One. 2010; 5(1): e8801. Published online 2010 Jan 20. doi: 10.1371/journal.pone.0008801

PMCID:: PMC2808357

Abstract Article PDF–1.1M

Select item 280682314.

Derivation of Escherichia coli O157:H7 from Its O55:H7 Precursor

Zhemin Zhou, Xiaomin Li, Bin Liu, Lothar Beutin, Jianguo Xu, Yan Ren, Lu Feng, Ruiting Lan, Peter R. Reeves, Lei Wang

PLoS One. 2010; 5(1): e8700. Published online 2010 Jan 14. doi: 10.1371/journal.pone.0008700

PMCID:: PMC2806823

Abstract Article PDF–520K

Select item 280626215.

Multilocus variable-number tandem repeat analysis for molecular typing and phylogenetic analysis of Shigella flexneri

You-Wun Wang, Haruo Watanabe, Dac Cam Phung, Sheng Kai Tung, Yeong-Sheng Lee, Jun Terajima, Shiu-Yun Liang, Chien-Shun Chiou

BMC Microbiol. 2009; 9: 278. Published online 2009 Dec 31. doi: 10.1186/1471-2180-9-278

PMCID:: PMC2806262

Abstract Article PDF–328K

Select item 265203716.

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

Kathryn E Holt, Julian Parkhill, Camila J Mazzoni, Philippe Roumagnac, François-Xavier Weill, Ian Goodhead, Richard Rance, Stephen Baker, Duncan J Maskell, John Wain, Christiane Dolecek, Mark Achtman, Gordon Dougan

Nat Genet. Author manuscript; available in PMC 2009 Mar 6.

Published in final edited form as: Nat Genet. 2008 Aug; 40(8): 987–993. Published online 2008 Jul 27. doi: 10.1038/ng.195