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Items: 1 to 20 of 211

1.
Cohesin gene mutations in tumorigenesis: from discovery to clinical significance
David A. Solomon, Jung-Sik Kim, Todd Waldman
BMB Rep. 2014 Jun; 47(6): 299–310. doi: 10.5483/BMBRep.2014.47.6.092
PMCID:
PMC4163871
AbstractArticlePDF–1.6M
2.
Genetic similarity between cancers and comorbid Mendelian diseases identifies candidate driver genes
Rachel D. Melamed, Kevin J. Emmett, Chioma Madubata, Andrey Rzhetsky, Raul Rabadan
Nat Commun. Author manuscript; available in PMC 2015 Oct 30.
Published in final edited form as: Nat Commun. 2015; 6: 7033. Published online 2015 Apr 30. doi: 10.1038/ncomms8033
PMCID:
PMC4416231
AbstractArticlePDF–1.9M
3.
Glioblastoma adaptation traced through decline of an IDH1 clonal driver and macro-evolution of a double-minute chromosome
F. Favero, N. McGranahan, M. Salm, N. J. Birkbak, J. Z. Sanborn, S. C. Benz, J. Becq, J. F. Peden, Z. Kingsbury, R. J. Grocok, S. Humphray, D. Bentley, B. Spencer-Dene, A. Gutteridge, M. Brada, S. Roger, P.-Y. Dietrich, T. Forshew, M. Gerlinger, A. Rowan, G. Stamp, A. C. Eklund, Z. Szallasi, C. Swanton
Ann Oncol. 2015 May; 26(5): 880–887. Published online 2015 Mar 2. doi: 10.1093/annonc/mdv127
PMCID:
PMC4405282
AbstractArticlePDF–469K
4.
Identifying overlapping mutated driver pathways by constructing gene networks in cancer
Hao Wu, Lin Gao, Feng Li, Fei Song, Xiaofei Yang, Nikola Kasabov
BMC Bioinformatics. 2015; 16(Suppl 5): S3. Published online 2015 Mar 18. doi: 10.1186/1471-2105-16-S5-S3
PMCID:
PMC4402595
AbstractArticlePDF–834K
5.
Integrative Multi-omics Module Network Inference with Lemon-Tree
Eric Bonnet, Laurence Calzone, Tom Michoel
PLoS Comput Biol. 2015 Feb; 11(2): e1003983. Published online 2015 Feb 13. doi: 10.1371/journal.pcbi.1003983
PMCID:
PMC4332478
AbstractArticlePDF–1.6M
6.
Genetic Variants Modulating CRIPTO Serum Levels Identified by Genome-Wide Association Study in Cilento Isolates
Daniela Ruggiero, Stefania Nappo, Teresa Nutile, Rossella Sorice, Francesco Talotta, Emilia Giorgio, Celine Bellenguez, Anne-Louise Leutenegger, Giovanna L. Liguori, Marina Ciullo
PLoS Genet. 2015 Jan; 11(1): e1004976. Published online 2015 Jan 28. doi: 10.1371/journal.pgen.1004976
PMCID:
PMC4309561
AbstractArticlePDF–690K
7.
Identification of Hedgehog pathway responsive glioblastomas by isocitrate dehydrogenase mutation
J. Gerardo Valadez, Vandana K. Grover, Melissa D. Carter, M. Wade Calcuttc, Sunday A. Abiria, Christopher J. Lundberg, Thomas V. Williams, Michael K. Cooper
Cancer Lett. Author manuscript; available in PMC 2015 Jan 27.
Published in final edited form as: Cancer Lett. 2013 Jan 28; 328(2): 297–306. Published online 2012 Oct 11. doi: 10.1016/j.canlet.2012.10.002
PMCID:
PMC4308293
AbstractArticlePDF–850K
8.
Distinguishing between driver and passenger mutations in individual cancer genomes by network enrichment analysis
Simon Kebede Merid, Daria Goranskaya, Andrey Alexeyenko
BMC Bioinformatics. 2014; 15(1): 308. Published online 2014 Sep 19. doi: 10.1186/1471-2105-15-308
PMCID:
PMC4262241
AbstractArticlePDF–1.6M
9.
Molecular pathologic diagnosis of epidermal growth factor receptor
Cecile L. Maire, Keith L. Ligon
Neuro Oncol. 2014 Oct; 16(Suppl 8): viii1–viii6. Published online 2014 Jan 1. doi: 10.1093/neuonc/nou294
PMCID:
PMC4207139
AbstractArticlePDF–289K
10.
Epigenetic dysregulation: a novel pathway of oncogenesis in pediatric brain tumors
Adam M. Fontebasso, Tenzin Gayden, Hamid Nikbakht, Michael Neirinck, Simon Papillon-Cavanagh, Jacek Majewski, Nada Jabado
Acta Neuropathol. 2014; 128(5): 615–627. Published online 2014 Jul 31. doi: 10.1007/s00401-014-1325-8
PMCID:
PMC4201756
AbstractArticlePDF–1.2M
11.
Mutational profiling of kinases in glioblastoma
Fonnet E Bleeker, Simona Lamba, Carlo Zanon, Remco J Molenaar, Theo JM Hulsebos, Dirk Troost, Angela A van Tilborg, W Peter Vandertop, Sieger Leenstra, Cornelis JF van Noorden, Alberto Bardelli
BMC Cancer. 2014; 14: 718. Published online 2014 Sep 26. doi: 10.1186/1471-2407-14-718
PMCID:
PMC4192443
AbstractArticlePDF–607K
12.
Hominoid-specific enzyme GLUD2 promotes growth of IDH1R132H glioma
Ruihuan Chen, Merry C. Nishimura, Samir Kharbanda, Frank Peale, Yuzhong Deng, Anneleen Daemen, William F. Forrest, Mandy Kwong, Maj Hedehus, Georgia Hatzivassiliou, Lori S. Friedman, Heidi S. Phillips
Proc Natl Acad Sci U S A. 2014 Sep 30; 111(39): 14217–14222. Published online 2014 Sep 15. doi: 10.1073/pnas.1409653111
PMCID:
PMC4191757
AbstractArticlePDF–1.6M
13.
Somatic intronic microsatellite loci differentiate glioblastoma from lower-grade gliomas
Enusha Karunasena, Lauren J. McIver, Brian R. Rood, Xiaowei Wu, Hongxiao Zhu, Jasmin H. Bavarva, Harold R. Garner
Oncotarget. 2014 Aug; 5(15): 6003–6014. Published online 2014 Jun 5. doi: 10.18632/oncotarget.2076
PMCID:
PMC4171608
AbstractArticlePDF–1.8M
14.
Identification of Variants in Primary and Recurrent Glioblastoma Using a Cancer-Specific Gene Panel and Whole Exome Sequencing
Selene M. Virk, Richard M. Gibson, Miguel E. Quinones-Mateu, Jill S. Barnholtz-Sloan
PLoS One. 2015; 10(5): e0124178. Published online 2015 May 7. doi: 10.1371/journal.pone.0124178
PMCID:
PMC4423782
AbstractArticlePDF–1.0M
15.
Expression level of hTERT is regulated by somatic mutation and common single nucleotide polymorphism at promoter region in glioblastoma
Chul-Kee Park, Se-Hoon Lee, Ji Young Kim, Ja Eun Kim, Tae Min Kim, Soon-Tae Lee, Seung Hong Choi, Sung-Hye Park, Il Han Kim
Oncotarget. 2014 May; 5(10): 3399–3407. Published online 2014 May 14. doi: 10.18632/oncotarget.1975
PMCID:
PMC4102818
AbstractArticlePDF–1.5M
16.
Prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles
Bülent Arman Aksoy, Emek Demir, Özgün Babur, Weiqing Wang, Xiaohong Jing, Nikolaus Schultz, Chris Sander
Bioinformatics. 2014 Jul 15; 30(14): 2051–2059. Published online 2014 Mar 24. doi: 10.1093/bioinformatics/btu164
PMCID:
PMC4080742
AbstractArticlePDF–901K
17.
Recurrent somatic alterations of FGFR1 and NTRK2 in pilocytic astrocytoma
David T.W. Jones, Barbara Hutter, Natalie Jäger, Andrey Korshunov, Marcel Kool, Hans-Jörg Warnatz, Thomas Zichner, Sally R. Lambert, Marina Ryzhova, Dong Anh Khuong Quang, Adam M. Fontebasso, Adrian M. Stütz, Sonja Hutter, Marc Zuckermann, Dominik Sturm, Jan Gronych, Bärbel Lasitschka, Sabine Schmidt, Huriye Seker-Cin, Hendrik Witt, Marc Sultan, Meryem Ralser, Paul A. Northcott, Volker Hovestadt, Sebastian Bender, Elke Pfaff, Sebastian Stark, Damien Faury, Jeremy Schwartzentruber, Jacek Majewski, Ursula D. Weber, Marc Zapatka, Benjamin Raeder, Matthias Schlesner, Catherine L. Worth, Cynthia C. Bartholomae, Christof von Kalle, Charles D. Imbusch, Sylwester Radomski, Chris Lawerenz, Peter van Sluis, Jan Koster, Richard Volckmann, Rogier Versteeg, Hans Lehrach, Camelia Monoranu, Beate Winkler, Andreas Unterberg, Christel Herold-Mende, Till Milde, Andreas E. Kulozik, Martin Ebinger, Martin U. Schuhmann, Yoon-Jae Cho, Scott L. Pomeroy, Andreas von Deimling, Olaf Witt, Michael D. Taylor, Stephan Wolf, Matthias A. Karajannis, Charles G. Eberhart, Wolfram Scheurlen, Martin Hasselblatt, Keith L. Ligon, Mark W. Kieran, Jan O. Korbel, Marie-Laure Yaspo, Benedikt Brors, Jörg Felsberg, Guido Reifenberger, V. Peter Collins, Nada Jabado, Roland Eils, Peter Lichter, Stefan M. Pfister
Nat Genet. Author manuscript; available in PMC 2014 Mar 12.
Published in final edited form as: Nat Genet. 2013 Aug; 45(8): 927–932. Published online 2013 Jun 30. doi: 10.1038/ng.2682
PMCID:
PMC3951336
AbstractArticlePDF–1.0M
18.
The Somatic Genomic Landscape of Glioblastoma
Cameron W. Brennan, Roel G.W. Verhaak, Aaron McKenna, Benito Campos, Houtan Noushmehr, Sofie R. Salama, Siyuan Zheng, Debyani Chakravarty, J. Zachary Sanborn, Samuel H. Berman, Rameen Beroukhim, Brady Bernard, Chang-Jiun Wu, Giannicola Genovese, Ilya Shmulevich, Jill Barnholtz-Sloan, Lihua Zou, Rahulsimham Vegesna, Sachet A. Shukla, Giovanni Ciriello, WK Yung, Wei Zhang, Carrie Sougnez, Tom Mikkelsen, Kenneth Aldape, Darell D. Bigner, Erwin G. Van Meir, Michael Prados, Andrew Sloan, Keith L. Black, Jennifer Eschbacher, Gaetano Finocchiaro, William Friedman, David W. Andrews, Abhijit Guha, Mary Iacocca, Brian P. O’Neill, Greg Foltz, Jerome Myers, Daniel J. Weisenberger, Robert Penny, Raju Kucherlapati, Charles M. Perou, D. Neil Hayes, Richard Gibbs, Marco Marra, Gordon B. Mills, Eric Lander, Paul Spellman, Richard Wilson, Chris Sander, John Weinstein, Matthew Meyerson, Stacey Gabriel, Peter W. Laird, David Haussler, Gad Getz, Lynda Chin
Cell. Author manuscript; available in PMC 2014 Oct 10.
Published in final edited form as: Cell. 2013 Oct 10; 155(2): 462–477. doi: 10.1016/j.cell.2013.09.034
Correction in:
volume 157 on page 753
PMCID:
PMC3910500
AbstractArticlePDF–4.2M
19.
Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data
Junhua Zhang, Shihua Zhang, Yong Wang, Xiang-Sun Zhang
BMC Syst Biol. 2013; 7(Suppl 2): S4. Published online 2013 Oct 14. doi: 10.1186/1752-0509-7-S2-S4
PMCID:
PMC3851989
AbstractArticlePDF–1.8M
20.
SomatiCA: Identifying, Characterizing and Quantifying Somatic Copy Number Aberrations from Cancer Genome Sequencing Data
Mengjie Chen, Murat Gunel, Hongyu Zhao
PLoS One. 2013; 8(11): e78143. Published online 2013 Nov 12. doi: 10.1371/journal.pone.0078143
PMCID:
PMC3827077
AbstractArticlePDF–1.0M

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