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Items: 19

1.
Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans
Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono
J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343
PMCID:
PMC9437848
AbstractArticlePDF–2.0M
2.
Filamin FLN-2 promotes MVB biogenesis by mediating vesicle docking on the actin cytoskeleton
Leiling Shi, Youli Jian, Meijiao Li, Tianchao Hao, Chonglin Yang, Xiaochen Wang
J Cell Biol. 2022 Jul 4; 221(7): e202201020. Published online 2022 May 16. doi: 10.1083/jcb.202201020
PMCID:
PMC9115679
AbstractArticlePDF–6.2M
3.
Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling
Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono
J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094
Correction in:
J Biol Chem. 2022 Jun; 298(6): 102081.
PMCID:
PMC8446793
AbstractArticlePDF–1.6M
4.
Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules
Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus
eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833
PMCID:
PMC8331183
AbstractArticlePDF–8.5M
5.
EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes
Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili
Nat Methods. Author manuscript; available in PMC 2021 Mar 26.
Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4
PMCID:
PMC7995176
AbstractArticlePDF–1.0M
6.
The conserved histone chaperone LIN‐53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans
Stefanie Müthel, Bora Uyar, Mei He, Anne Krause, Burcu Vitrinel, Selman Bulut, Djordje Vasiljevic, Iris Marchal, Stefan Kempa, Altuna Akalin, Baris Tursun
Aging Cell. 2019 Dec; 18(6): e13012. Published online 2019 Aug 9. doi: 10.1111/acel.13012
PMCID:
PMC6826145
AbstractArticlePDF–3.0M
7.
OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes
Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye
Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307
PMCID:
PMC6216590
AbstractArticlePDF–1.4M
8.
The RNA-binding protein repertoire of Arabidopsis thaliana
Claudius Marondedze, Ludivine Thomas, Natalia L. Serrano, Kathryn S. Lilley, Chris Gehring
Sci Rep. 2016; 6: 29766. Published online 2016 Jul 11. doi: 10.1038/srep29766
PMCID:
PMC4942612
AbstractArticlePDF–1.2M
9.
ESCRT-Dependent Cell Death in a Caenorhabditis elegans Model of the Lysosomal Storage Disorder Mucolipidosis Type IV
Julie M. Huynh, Hope Dang, Isabel A. Munoz-Tucker, Marvin O’Ketch, Ian T. Liu, Savannah Perno, Natasha Bhuyan, Allison Crain, Ivan Borbon, Hanna Fares
Genetics. 2016 Feb; 202(2): 619–638. Published online 2015 Nov 19. doi: 10.1534/genetics.115.182485
Correction in:
Genetics. 2016 Apr; 202(4): 1585.
PMCID:
PMC4788239
AbstractArticlePDF–5.6M
10.
ITSN-1 Controls Vesicle Recycling at the Neuromuscular Junction and Functions in Parallel with DAB-1
Wei Wang, Magali Bouhours, Elena O. Gracheva, Edward H. Liao, Keli Xu, Ameet S. Sengar, Xiaofeng Xin, John Roder, Charles Boone, Janet E. Richmond, Mei Zhen, Sean E. Egan
Traffic. Author manuscript; available in PMC 2013 Oct 5.
Published in final edited form as: Traffic. 2008 May; 9(5): 742–754. Published online 2008 Feb 20. doi: 10.1111/j.1600-0854.2008.00712.x
PMCID:
PMC3791081
AbstractArticlePDF–5.0M
11.
SH3 interactome conserves general function over specific form
Xiaofeng Xin, David Gfeller, Jackie Cheng, Raffi Tonikian, Lin Sun, Ailan Guo, Lianet Lopez, Alevtina Pavlenco, Adenrele Akintobi, Yingnan Zhang, Jean-François Rual, Bridget Currell, Somasekar Seshagiri, Tong Hao, Xinping Yang, Yun A Shen, Kourosh Salehi-Ashtiani, Jingjing Li, Aaron T Cheng, Dryden Bouamalay, Adrien Lugari, David E Hill, Mark L Grimes, David G Drubin, Barth D Grant, Marc Vidal, Charles Boone, Sachdev S Sidhu, Gary D Bader
Mol Syst Biol. 2013; 9: 652. Published online 2013 Apr 2. doi: 10.1038/msb.2013.9
PMCID:
PMC3658277
AbstractArticlePDF–2.3M
12.
A Snapshot of the Physical and Functional Wiring of the Eps15 Homology Domain Network in the Nematode
Hanako Tsushima, Maria Grazia Malabarba, Stefano Confalonieri, Francesca Senic-Matuglia, Lisette G. G. C. Verhoef, Cristina Bartocci, Giovanni D'Ario, Andrea Cocito, Pier Paolo Di Fiore, Anna Elisabetta Salcini
PLoS One. 2013; 8(2): e56383. Published online 2013 Feb 12. doi: 10.1371/journal.pone.0056383
PMCID:
PMC3570524
AbstractArticlePDF–798K
13.
The Atg6/Vps30/Beclin 1 ortholog BEC-1 mediates endocytic retrograde transport in addition to autophagy in C. elegans
Alexander Ruck, John Attonito, Kelly T Garces, Lizbeth Núnez, Nicholas J Palmisano, Zahava Rubel, Zhiyong Bai, Ken C.Q Nguyen, Lei Sun, Barth D Grant, David H Hall, Alicia Meléndez
Autophagy. 2011 Apr; 7(4): 386–400. Published online 2011 Apr 1. doi: 10.4161/auto.7.4.14391
PMCID:
PMC3108013
AbstractArticlePDF–24M
14.
OrthoList: A Compendium of C. elegans Genes with Human Orthologs
Daniel D. Shaye, Iva Greenwald
PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085
Correction in:
PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.
PMCID:
PMC3102077
AbstractArticlePDF–530K
15.
Empirically-controlled mapping of the Caenorhabditis elegans protein-protein interactome network
Nicolas Simonis, Jean-François Rual, Anne-Ruxandra Carvunis, Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie M Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amélie Dricot, Muhammed A Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin Sook Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin C Gunsalus, Michael E Cusick, David E Hill, Jan Tavernier, Frederick P Roth, Marc Vidal
Nat Methods. Author manuscript; available in PMC 2011 Mar 15.
Published in final edited form as: Nat Methods. 2009 Jan; 6(1): 47–54. doi: 10.1038/nmeth.1279
PMCID:
PMC3057923
AbstractArticlePDF–3.0M
16.
UEV-1 Is an Ubiquitin-Conjugating Enzyme Variant That Regulates Glutamate Receptor Trafficking in C. elegans Neurons
Lawrence B. Kramer, Jaegal Shim, Michelle L. Previtera, Nora R. Isack, Ming-Chih Lee, Bonnie L. Firestein, Christopher Rongo
PLoS One. 2010; 5(12): e14291. Published online 2010 Dec 13. doi: 10.1371/journal.pone.0014291
PMCID:
PMC3001443
AbstractArticlePDF–4.5M
17.
A novel requirement for C. elegans Alix/ALX-1 in RME-1 mediated membrane transport
Anbing Shi, Saumya Pant, Zita Balklava, Carlos Chih-Hsiung Chen, Vanesa Figueroa, Barth D. Grant
Curr Biol. Author manuscript; available in PMC 2008 Nov 20.
Published in final edited form as: Curr Biol. 2007 Nov 20; 17(22): 1913–1924. Published online 2007 Nov 8. doi: 10.1016/j.cub.2007.10.045
PMCID:
PMC2175126
AbstractArticlePDF–1.7M
18.
The Bro1-Domain Protein, EGO-2, Promotes Notch Signaling in Caenorhabditis elegans
Ying Liu, Eleanor M. Maine
Genetics. 2007 Aug; 176(4): 2265–2277. doi: 10.1534/genetics.107.071225
PMCID:
PMC1950630
AbstractArticlePDF–1002K
19.
A Map of the Interactome Network of the Metazoan C. elegans
Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2006 Dec 14.
Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403
PMCID:
PMC1698949
AbstractArticlePDF–1.4M

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