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Items: 18

1.
SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans
Valerie J. Robert, Matthieu Caron, Loic Gely, Annie Adrait, Victoria Pakulska, Yohann Couté, Manon Chevalier, Christian G. Riedel, Cecile Bedet, Francesca Palladino
Development. 2023 Nov 1; 150(21): dev201755. Published online 2023 Oct 17. doi: 10.1242/dev.201755
PMCID:
PMC10617626
AbstractArticle
2.
Systematic transcriptome analysis associated with physiological and chronological aging in Caenorhabditis elegans
Seokjin Ham, Sieun S. Kim, Sangsoon Park, Eun Ji E. Kim, Sujeong Kwon, Hae-Eun H. Park, Yoonji Jung, Seung-Jae V. Lee
Genome Res. 2022 Nov-Dec; 32(11-12): 2003–2014. doi: 10.1101/gr.276515.121
PMCID:
PMC9808617
AbstractArticlePDF–2.2M
3.
A forward genetic screen in C. elegans identifies conserved residues of spliceosomal proteins PRP8 and SNRNP200/BRR2 with a role in maintaining 5′ splice site identity
Catiana H Cartwright-Acar, Kenneth Osterhoudt, Jessie M N G L Suzuki, Destiny R Gomez, Sol Katzman, Alan M Zahler
Nucleic Acids Res. 2022 Nov 11; 50(20): 11834–11857. Published online 2022 Nov 2. doi: 10.1093/nar/gkac991
PMCID:
PMC9723624
AbstractArticlePDF–6.4M
4.
Cilia regeneration requires an RNA splicing factor from the ciliary base
Kaiming Xu, Guangshuo Ou
Cell Regen. 2022 Dec; 11: 29. Published online 2022 Oct 1. doi: 10.1186/s13619-022-00130-x
Correction in:
Cell Regen. 2022 Dec; 11: 41.
PMCID:
PMC9525525
AbstractArticlePDF–1.9M
5.
A novel, essential trans-splicing protein connects the nematode SL1 snRNP to the CBC-ARS2 complex
Rotimi Yemi Fasimoye, Rosie Elizabeth Barker Spencer, Eva Soto-Martin, Peter Eijlers, Haitem Elmassoudi, Sarah Brivio, Carolina Mangana, Viktorija Sabele, Radoslava Rechtorikova, Marius Wenzel, Bernadette Connolly, Jonathan Pettitt, Berndt Müller
Nucleic Acids Res. 2022 Jul 22; 50(13): 7591–7607. Published online 2022 Jun 23. doi: 10.1093/nar/gkac534
PMCID:
PMC9303266
AbstractArticlePDF–5.5M
6.
Functional recovery of the germ line following splicing collapse
Wei Cao, Christopher Tran, Stuart K. Archer, Sandeep Gopal, Roger Pocock
Cell Death Differ. 2022 Apr; 29(4): 772–787. Published online 2021 Oct 18. doi: 10.1038/s41418-021-00891-z
PMCID:
PMC8991207
AbstractArticlePDF–4.6M
7.
Rewiring of the ubiquitinated proteome determines ageing in C. elegans
Seda Koyuncu, Rute Loureiro, Hyun Ju Lee, Prerana Wagle, Marcus Krueger, David Vilchez
Nature. 2021; 596(7871): 285–290. Published online 2021 Jul 28. doi: 10.1038/s41586-021-03781-z
Correction in:
Nature. 2024; 626(8001): E20.
PMCID:
PMC8357631
AbstractArticlePDF–9.2M
8.
Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules
Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus
eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833
PMCID:
PMC8331183
AbstractArticlePDF–8.5M
9.
EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes
Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili
Nat Methods. Author manuscript; available in PMC 2021 Mar 26.
Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4
PMCID:
PMC7995176
AbstractArticlePDF–1.0M
10.
OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes
Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye
Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307
PMCID:
PMC6216590
AbstractArticlePDF–1.4M
11.
β-Integrin de-phosphorylation by the Density-Enhanced Phosphatase DEP-1 attenuates EGFR signaling in C. elegans
Michael Walser, Christoph Alois Umbricht, Erika Fröhli, Paolo Nanni, Alex Hajnal
PLoS Genet. 2017 Jan; 13(1): e1006592. Published online 2017 Jan 30. doi: 10.1371/journal.pgen.1006592
PMCID:
PMC5305270
AbstractArticlePDF–2.8M
12.
The RNA-binding protein repertoire of Arabidopsis thaliana
Claudius Marondedze, Ludivine Thomas, Natalia L. Serrano, Kathryn S. Lilley, Chris Gehring
Sci Rep. 2016; 6: 29766. Published online 2016 Jul 11. doi: 10.1038/srep29766
PMCID:
PMC4942612
AbstractArticlePDF–1.2M
13.
RSR-2, the Caenorhabditis elegans Ortholog of Human Spliceosomal Component SRm300/SRRM2, Regulates Development by Influencing the Transcriptional Machinery
Laura Fontrodona, Montserrat Porta-de-la-Riva, Tomás Morán, Wei Niu, Mònica Díaz, David Aristizábal-Corrales, Alberto Villanueva, Simó Schwartz, Jr, Valerie Reinke, Julián Cerón
PLoS Genet. 2013 Jun; 9(6): e1003543. Published online 2013 Jun 6. doi: 10.1371/journal.pgen.1003543
PMCID:
PMC3675011
AbstractArticlePDF–3.0M
14.
OrthoList: A Compendium of C. elegans Genes with Human Orthologs
Daniel D. Shaye, Iva Greenwald
PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085
Correction in:
PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.
PMCID:
PMC3102077
AbstractArticlePDF–530K
15.
A Genomewide RNAi Screen for Genes That Affect the Stability, Distribution and Function of P Granules in Caenorhabditis elegans
Dustin L. Updike, Susan Strome
Genetics. 2009 Dec; 183(4): 1397–1419. doi: 10.1534/genetics.109.110171
PMCID:
PMC2787428
AbstractArticlePDF–6.6M
16.
Suppressors of the cdc-25.1(gf)-associated intestinal hyperplasia reveal important maternal roles for prp-8 and a subset of splicing factors in C. elegans
Michaël Hebeisen, John Drysdale, Richard Roy
RNA. 2008 Dec; 14(12): 2618–2633. doi: 10.1261/rna.1168408
PMCID:
PMC2590948
AbstractArticlePDF–610K
17.
Crystal structure of the C-terminal domain of splicing factor Prp8 carrying retinitis pigmentosa mutants
Lingdi Zhang, Jingping Shen, Michael T. Guarnieri, Annie Heroux, Kui Yang, Rui Zhao
Protein Sci. 2007 Jun; 16(6): 1024–1031. doi: 10.1110/ps.072872007
PMCID:
PMC2206663
AbstractArticlePDF–492K
18.
A Map of the Interactome Network of the Metazoan C. elegans
Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2006 Dec 14.
Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403
PMCID:
PMC1698949
AbstractArticlePDF–1.4M

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