PMC Links for GEO Profiles (Select 99520714) - PMC

Select item 99771491.

Genome sequencing of C. elegans balancer strains reveals previously unappreciated complex genomic rearrangements

Tatiana Maroilley, Stephane Flibotte, Francesca Jean, Victoria Rodrigues Alves Barbosa, Andrew Galbraith, Afiya Razia Chida, Filip Cotra, Xiao Li, Larisa Oncea, Mark Edgley, Don Moerman, Maja Tarailo-Graovac

Genome Res. 2023 Jan; 33(1): 154–167. doi: 10.1101/gr.276988.122

PMCID:: PMC9977149

Abstract Article PDF–8.7M

Select item 94378482.

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans

Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono

J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343

PMCID:: PMC9437848

Abstract Article PDF–2.0M

Select item 84467933.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Abstract Article PDF–1.6M

Select item 83311834.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 79951765.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 62165906.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 47809297.

Genomic overview of protein kinases.

Gerard Manning

WormBook. 2005 : 1–19. Published online 2005 Dec 13. doi: 10.1895/wormbook.1.60.1

PMCID:: PMC4780929

Abstract Article

Select item 46861098.

DLK-1/p38 MAP Kinase Signaling Controls Cilium Length by Regulating RAB-5 Mediated Endocytosis in Caenorhabditis elegans

Aniek van der Vaart, Suzanne Rademakers, Gert Jansen

PLoS Genet. 2015 Dec; 11(12): e1005733. Published online 2015 Dec 11. doi: 10.1371/journal.pgen.1005733

PMCID:: PMC4686109

Abstract Article PDF–5.7M

Select item 44720199.

Twitchin kinase interacts with MAPKAP kinase 2 in Caenorhabditis elegans striated muscle

Yohei Matsunaga, Hiroshi Qadota, Miho Furukawa, Heejoo (Helen) Choe, Guy M. Benian

Mol Biol Cell. 2015 Jun 1; 26(11): 2096–2111. doi: 10.1091/mbc.E14-05-1009

PMCID:: PMC4472019

Abstract Article PDF–4.5M

Select item 392487410.

Insulin/IGF1 Signaling Inhibits Age-Dependent Axon Regeneration

Alexandra B. Byrne, Trent Walradt, Kathryn E. Gardner, Austin Hubbert, Valerie Reinke, Marc Hammarlund

Neuron. Author manuscript; available in PMC 2015 Feb 5.

Published in final edited form as: Neuron. 2014 Feb 5; 81(3): 561–573. Published online 2014 Jan 16. doi: 10.1016/j.neuron.2013.11.019

PMCID:: PMC3924874

Abstract Article PDF–3.7M

Select item 318326911.

Axon regeneration mechanisms: insights from C. elegans

Lizhen Chen, Andrew D. Chisholm

Trends Cell Biol. Author manuscript; available in PMC 2012 Oct 1.

Published in final edited form as: Trends Cell Biol. 2011 Oct; 21(10): 577–584. Published online 2011 Sep 8. doi: 10.1016/j.tcb.2011.08.003

PMCID:: PMC3183269

Abstract Article PDF–708K

Select item 312787312.

Axon regeneration requires coordinate activation of p38 and JNK MAPK pathways

Paola Nix, Naoki Hisamoto, Kunihiro Matsumoto, Michael Bastiani

Proc Natl Acad Sci U S A. 2011 Jun 28; 108(26): 10738–10743. Published online 2011 Jun 13. doi: 10.1073/pnas.1104830108

PMCID:: PMC3127873

Abstract Article PDF–1.0M

Select item 310207713.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 277282114.

The DLK-1 kinase promotes mRNA stability and local translation in C. elegans synapses and axon regeneration

Dong Yan, Zilu Wu, Andrew D. Chisholm, Yishi Jin

Cell. Author manuscript; available in PMC 2010 Mar 4.

Published in final edited form as: Cell. 2009 Sep 4; 138(5): 1005–1018. doi: 10.1016/j.cell.2009.06.023

PMCID:: PMC2772821

Abstract Article PDF–5.4M

Select item 265700315.

A Human Protein Interaction Network Shows Conservation of Aging Processes between Human and Invertebrate Species

Russell Bell, Alan Hubbard, Rakesh Chettier, Di Chen, John P. Miller, Pankaj Kapahi, Mark Tarnopolsky, Sudhir Sahasrabuhde, Simon Melov, Robert E. Hughes

PLoS Genet. 2009 Mar; 5(3): e1000414. Published online 2009 Mar 13. doi: 10.1371/journal.pgen.1000414

PMCID:: PMC2657003

Abstract Article PDF–821K

Select item 169894916.

A Map of the Interactome Network of the Metazoan C. elegans

Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal

Science. Author manuscript; available in PMC 2006 Dec 14.

Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403

PMCID:: PMC1698949

Abstract Article PDF–1.4M

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