PMC Links for GEO Profiles (Select 99451174) - PMC

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 79951764.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 77184805.

Germ Granules Allow Transmission of Small RNA-Based Parental Responses in the “Germ Plasm”

Itamar Lev, Oded Rechavi

iScience. 2020 Dec 18; 23(12): 101831. Published online 2020 Nov 19. doi: 10.1016/j.isci.2020.101831

PMCID:: PMC7718480

Abstract Article PDF–1.1M

Select item 73972126.

Purification and Characterization of Double-Stranded Nucleic Acid-Dependent ATPase Activities of Tagged Dicer-Related Helicase 1 and its Short Isoform in Caenorhabditis elegans

Taishi Kobayashi, Takuro Murakami, Yuu Hirose, Toshihiko Eki

Genes (Basel) 2020 Jul; 11(7): 734. Published online 2020 Jul 1. doi: 10.3390/genes11070734

PMCID:: PMC7397212

Abstract Article PDF–2.3M

Select item 65824107.

Interplay between small RNA pathways shapes chromatin landscapes in C. elegans

Ekaterina S Gushchanskaia, Ruben Esse, Qicheng Ma, Nelson C Lau, Alla Grishok

Nucleic Acids Res. 2019 Jun 20; 47(11): 5603–5616. Published online 2019 Apr 24. doi: 10.1093/nar/gkz275

PMCID:: PMC6582410

Abstract Article PDF–6.1M

Select item 63511048.

The TRIM-NHL protein NHL-2 is a co-factor in the nuclear and somatic RNAi pathways in C. elegans

Gregory M Davis, Shikui Tu, Joshua WT Anderson, Rhys N Colson, Menachem J Gunzburg, Michelle A Francisco, Debashish Ray, Sean P Shrubsole, Julia A Sobotka, Uri Seroussi, Robert X Lao, Tuhin Maity, Monica Z Wu, Katherine McJunkin, Quaid D Morris, Timothy R Hughes, Jacqueline A Wilce, Julie M Claycomb, Zhiping Weng, Peter R Boag

eLife. 2018; 7: e35478. Published online 2018 Dec 21. doi: 10.7554/eLife.35478

PMCID:: PMC6351104

Abstract Article PDF–4.9M

Select item 62165909.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 607211110.

Distinct regions of the intrinsically disordered protein MUT-16 mediate assembly of a small RNA amplification complex and promote phase separation of Mutator foci

Celja J. Uebel, Dorian C. Anderson, Lisa M. Mandarino, Kevin I. Manage, Stephan Aynaszyan, Carolyn M. Phillips

PLoS Genet. 2018 Jul; 14(7): e1007542. Published online 2018 Jul 23. doi: 10.1371/journal.pgen.1007542

PMCID:: PMC6072111

Abstract Article PDF–2.5M

Select item 600364111.

GTSF‐1 is required for formation of a functional RNA‐dependent RNA Polymerase complex in Caenorhabditis elegans

Miguel Vasconcelos Almeida, Sabrina Dietz, Stefan Redl, Emil Karaulanov, Andrea Hildebrandt, Christian Renz, Helle D Ulrich, Julian König, Falk Butter, René F Ketting

EMBO J. 2018 Jun 15; 37(12): e99325. Published online 2018 May 16. doi: 10.15252/embj.201899325

PMCID:: PMC6003641

Abstract Article PDF–2.9M

Select item 532559912.

ELLI-1, a novel germline protein, modulates RNAi activity and P-granule accumulation in Caenorhabditis elegans

Karolina M. Andralojc, Anne C. Campbell, Ashley L. Kelly, Markus Terrey, Paige C. Tanner, Ian M. Gans, Michael J. Senter-Zapata, Eraj S. Khokhar, Dustin L. Updike

PLoS Genet. 2017 Feb; 13(2): e1006611. Published online 2017 Feb 9. doi: 10.1371/journal.pgen.1006611

PMCID:: PMC5325599

Abstract Article PDF–5.8M

Select item 485894513.

In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics

Jia-Xuan Chen, Patricia G. Cipriani, Desirea Mecenas, Jolanta Polanowska, Fabio Piano, Kristin C. Gunsalus, Matthias Selbach

Mol Cell Proteomics. 2016 May; 15(5): 1642–1657. Published online 2016 Feb 24. doi: 10.1074/mcp.M115.053975

PMCID:: PMC4858945

Abstract Article PDF–3.1M

Select item 457390214.

The Regulatory Landscape of Lineage Differentiation in a Metazoan Embryo

Zhuo Du, Anthony Santella, Fei He, Pavak K. Shah, Yuko Kamikawa, Zhirong Bao

Dev Cell. Author manuscript; available in PMC 2016 Sep 14.

Published in final edited form as: Dev Cell. 2015 Sep 14; 34(5): 592–607. Published online 2015 Aug 27. doi: 10.1016/j.devcel.2015.07.014

PMCID:: PMC4573902

Abstract Article PDF–2.6M

Select item 397331815.

Megan E. Fitzgerald, Adriana Vela, Anna Marie Pyle

Nucleic Acids Res. 2014 Apr; 42(6): 3919–3930. Published online 2014 Jan 15. doi: 10.1093/nar/gkt1383

PMCID:: PMC3973318

Abstract Article PDF–4.2M

Select item 379169816.

Homologous RIG-I–like helicase proteins direct RNAi-mediated antiviral immunity in C. elegans by distinct mechanisms

Xunyang Guo, Rui Zhang, Jeffrey Wang, Shou-Wei Ding, Rui Lu

Proc Natl Acad Sci U S A. 2013 Oct 1; 110(40): 16085–16090. Published online 2013 Sep 16. doi: 10.1073/pnas.1307453110

PMCID:: PMC3791698

Abstract Article PDF–1.0M

Select item 368416917.

Tudor domain ERI-5 tethers an RNA-dependent RNA polymerase to DCR-1 to potentiate endo-RNAi

Caroline Thivierge, Neetha Makil, Mathieu Flamand, Jessica J. Vasale, Craig C. Mello, James Wohlschlegel, Darryl Conte, Jr., Thomas F. Duchaine

Nat Struct Mol Biol. Author manuscript; available in PMC 2013 Jun 17.

Published in final edited form as: Nat Struct Mol Biol. 2011 Dec 18; 19(1): 90–97. Published online 2011 Dec 18. doi: 10.1038/nsmb.2186

Correction in:: volume 20 on page 244

PMCID:: PMC3684169

Abstract Article PDF–2.4M

Select item 346384118.

CSR-1 RNAi pathway positively regulates histone expression in C. elegans

Daphne C Avgousti, Santhosh Palani, Yekaterina Sherman, Alla Grishok

EMBO J. 2012 Oct 3; 31(19): 3821–3832. Published online 2012 Aug 3. doi: 10.1038/emboj.2012.216

PMCID:: PMC3463841

Abstract Article PDF–1.6M

Select item 335331719.

Piwi and piRNAs Act Upstream of an Endogenous siRNA Pathway to suppress Tc3 Transposon Mobility in the Caenorhabditis elegans germline

Partha P. Das, Marloes P. Bagijn, Leonard D. Goldstein, Julie R. Woolford, Nicolas J. Lehrbach, Alexandra Sapetschnig, Heeran R. Buhecha, Michael J. Gilchrist, Kevin L. Howe, Rory Stark, Nik Matthews, Eugene Berezikov, René F. Ketting, Simon Tavaré, Eric A. Miska

Mol Cell. Author manuscript; available in PMC 2012 May 16.

Published in final edited form as: Mol Cell. 2008 Jul 11; 31(1): 79–90. Published online 2008 Jun 19. doi: 10.1016/j.molcel.2008.06.003

PMCID:: PMC3353317

Abstract Article PDF–2.3M

Select item 329325720.

A conserved PUF/Ago/eEF1A complex attenuates translation elongation

Kyle Friend, Zachary T. Campbell, Amy Cooke, Peggy Kroll-Conner, Marvin P. Wickens, Judith Kimble

Nat Struct Mol Biol. Author manuscript; available in PMC 2012 Aug 1.

Published in final edited form as: Nat Struct Mol Biol. 2012 Feb; 19(2): 176–183. Published online 2012 Jan 8. doi: 10.1038/nsmb.2214

PMCID:: PMC3293257

Abstract Article PDF–1.8M

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