PMC Links for GEO Profiles (Select 99435735) - PMC

Select item 106176261.

SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans

Valerie J. Robert, Matthieu Caron, Loic Gely, Annie Adrait, Victoria Pakulska, Yohann Couté, Manon Chevalier, Christian G. Riedel, Cecile Bedet, Francesca Palladino

Development. 2023 Nov 1; 150(21): dev201755. Published online 2023 Oct 17. doi: 10.1242/dev.201755

PMCID:: PMC10617626

Abstract Article

Select item 90650842.

Functional identification of microRNA-centered complexes in C. elegans

Shilpa Hebbar, Ganesh Panzade, Ajay A. Vashisht, James A. Wohlschlegel, Isana Veksler-Lublinsky, Anna Y. Zinovyeva

Sci Rep. 2022; 12: 7133. Published online 2022 May 3. doi: 10.1038/s41598-022-10771-2

PMCID:: PMC9065084

Abstract Article PDF–2.2M

Select item 90207163.

A modified TurboID approach identifies tissue-specific centriolar components in C. elegans

Elisabeth Holzer, Cornelia Rumpf-Kienzl, Sebastian Falk, Alexander Dammermann

PLoS Genet. 2022 Apr; 18(4): e1010150. Published online 2022 Apr 20. doi: 10.1371/journal.pgen.1010150

Correction in:: PLoS Genet. 2023 Feb; 19(2): e1010645.

PMCID:: PMC9020716

Abstract Article PDF–2.0M

Select item 83311834.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 79951765.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 62165906.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 48589457.

In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics

Jia-Xuan Chen, Patricia G. Cipriani, Desirea Mecenas, Jolanta Polanowska, Fabio Piano, Kristin C. Gunsalus, Matthias Selbach

Mol Cell Proteomics. 2016 May; 15(5): 1642–1657. Published online 2016 Feb 24. doi: 10.1074/mcp.M115.053975

PMCID:: PMC4858945

Abstract Article PDF–3.1M

Select item 40101368.

MUT-14 and SMUT-1 DEAD box RNA helicases have overlapping roles in germline RNAi and endogenous siRNA formation

Carolyn M. Phillips, Brooke E. Montgomery, Peter C. Breen, Elke F. Roovers, Young-Soo Rim, Toshiro K. Ohsumi, Martin A. Newman, Josien C. van Wolfswinkel, Rene F. Ketting, Gary Ruvkun, Taiowa A. Montgomery

Curr Biol. Author manuscript; available in PMC 2015 Apr 14.

Published in final edited form as: Curr Biol. 2014 Apr 14; 24(8): 839–844. Published online 2014 Mar 27. doi: 10.1016/j.cub.2014.02.060

PMCID:: PMC4010136

Abstract Article PDF–1.3M

Select item 37944399.

Extensive Rewiring and Complex Evolutionary Dynamics in a C. elegans Multiparameter Transcription Factor Network

John S. Reece-Hoyes, Carles Pons, Alos Diallo, Akihiro Mori, Shaleen Shrestha, Sreenath Kadreppa, Justin Nelson, Stephanie DiPrima, Amelie Dricot, Bryan R. Lajoie, Philippe Souza Moraes Ribeiro, Matthew T. Weirauch, David E. Hill, Timothy R. Hughes, Chad L. Myers, Albertha J.M. Walhout

Mol Cell. Author manuscript; available in PMC 2013 Oct 10.

Published in final edited form as: Mol Cell. 2013 Jul 11; 51(1): 116–127. Published online 2013 Jun 20. doi: 10.1016/j.molcel.2013.05.018

PMCID:: PMC3794439

Abstract Article PDF–5.2M

Select item 355492110.

RNA Targets and Specificity of Staufen, a Double-stranded RNA-binding Protein in Caenorhabditis elegans

Jacqueline Baca LeGendre, Zachary T. Campbell, Peggy Kroll-Conner, Phil Anderson, Judith Kimble, Marvin Wickens

J Biol Chem. 2013 Jan 25; 288(4): 2532–2545. Published online 2012 Nov 29. doi: 10.1074/jbc.M112.397349

PMCID:: PMC3554921

Abstract Article PDF–2.3M

Select item 310207711.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 305792312.

Empirically-controlled mapping of the Caenorhabditis elegans protein-protein interactome network

Nicolas Simonis, Jean-François Rual, Anne-Ruxandra Carvunis, Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie M Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amélie Dricot, Muhammed A Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin Sook Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin C Gunsalus, Michael E Cusick, David E Hill, Jan Tavernier, Frederick P Roth, Marc Vidal

Nat Methods. Author manuscript; available in PMC 2011 Mar 15.

Published in final edited form as: Nat Methods. 2009 Jan; 6(1): 47–54. doi: 10.1038/nmeth.1279

PMCID:: PMC3057923

Abstract Article PDF–3.0M

Select item 269436313.

An Integrated Strategy to Study Muscle Development and Myofilament Structure in Caenorhabditis elegans

Barbara Meissner, Adam Warner, Kim Wong, Nicholas Dube, Adam Lorch, Sheldon J. McKay, Jaswinder Khattra, Teresa Rogalski, Aruna Somasiri, Iasha Chaudhry, Rebecca M. Fox, David M. Miller, III, David L. Baillie, Robert A. Holt, Steven J. M. Jones, Marco A. Marra, Donald G. Moerman

PLoS Genet. 2009 Jun; 5(6): e1000537. Published online 2009 Jun 26. doi: 10.1371/journal.pgen.1000537

PMCID:: PMC2694363

Abstract Article PDF–1.3M

Select item 198735114.

Identification and analysis of internal promoters in Caenorhabditis elegans operons

Peiming Huang, Erin D. Pleasance, Jason S. Maydan, Rebecca Hunt-Newbury, Nigel J. O’Neil, Allan Mah, David L. Baillie, Marco A. Marra, Donald G. Moerman, Steven J.M. Jones

Genome Res. 2007 Oct; 17(10): 1478–1485. doi: 10.1101/gr.6824707

PMCID:: PMC1987351

Abstract Article PDF–331K

Select item 185517315.

Efficient target-selected mutagenesis in Caenorhabditis elegans: Toward a knockout for every gene

Edwin Cuppen, Eelke Gort, Esther Hazendonk, Josine Mudde, José van de Belt, Isaäc J. Nijman, Victor Guryev, Ronald H.A. Plasterk

Genome Res. 2007 May; 17(5): 649–658. doi: 10.1101/gr.6080607

PMCID:: PMC1855173

Abstract Article PDF–674K

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