PMC Links for GEO Profiles (Select 99358822) - PMC

Select item 106176261.

SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans

Valerie J. Robert, Matthieu Caron, Loic Gely, Annie Adrait, Victoria Pakulska, Yohann Couté, Manon Chevalier, Christian G. Riedel, Cecile Bedet, Francesca Palladino

Development. 2023 Nov 1; 150(21): dev201755. Published online 2023 Oct 17. doi: 10.1242/dev.201755

PMCID:: PMC10617626

Abstract Article

Select item 94378482.

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans

Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono

J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343

PMCID:: PMC9437848

Abstract Article PDF–2.0M

Select item 84467933.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Abstract Article PDF–1.6M

Select item 82191674.

SNX-3 mediates retromer-independent tubular endosomal recycling by opposing EEA-1-facilitated trafficking

Yangli Tian, Qiaoju Kang, Xuemeng Shi, Yuan Wang, Nali Zhang, Huan Ye, Qifeng Xu, Tao Xu, Rongying Zhang

PLoS Genet. 2021 Jun; 17(6): e1009607. Published online 2021 Jun 3. doi: 10.1371/journal.pgen.1009607

PMCID:: PMC8219167

Abstract Article PDF–6.0M

Select item 79951765.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 72825076.

Dominant-negative VPS-4 disrupts ODR-10::GFP distribution but has limited effects on chemotaxis

Ellen Zocher, Nelson Ruth, Caroline Dahlberg

MicroPubl Biol. 2018; 2018: 10.17912/gnyw-v322. Published online 2018 Aug 2. doi: 10.17912/gnyw-v322

PMCID:: PMC7282507

Article PDF–333K

Select item 68164597.

Biochemical Approaches to Studying Caenorhabditis elegans ESCRT Functions In Vitro

Samuel Block, Amber L. Schuh, Anjon Audhya

Methods Mol Biol. Author manuscript; available in PMC 2020 Jan 1.

Published in final edited form as: Methods Mol Biol. 2019; 1998: 189–202. doi: 10.1007/978-1-4939-9492-2_14

PMCID:: PMC6816459

Abstract Article PDF–549K

Select item 62165908.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 61370769.

FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells

Ena Kolundzic, Andreas Ofenbauer, Selman I. Bulut, Bora Uyar, Gülkiz Baytek, Anne Sommermeier, Stefanie Seelk, Mei He, Antje Hirsekorn, Dubravka Vucicevic, Altuna Akalin, Sebastian Diecke, Scott A. Lacadie, Baris Tursun

Dev Cell. 2018 Sep 10; 46(5): 611–626.e12. doi: 10.1016/j.devcel.2018.07.006

PMCID:: PMC6137076

Abstract Article

Select item 485894510.

In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics

Jia-Xuan Chen, Patricia G. Cipriani, Desirea Mecenas, Jolanta Polanowska, Fabio Piano, Kristin C. Gunsalus, Matthias Selbach

Mol Cell Proteomics. 2016 May; 15(5): 1642–1657. Published online 2016 Feb 24. doi: 10.1074/mcp.M115.053975

PMCID:: PMC4858945

Abstract Article PDF–3.1M

Select item 457390211.

The Regulatory Landscape of Lineage Differentiation in a Metazoan Embryo

Zhuo Du, Anthony Santella, Fei He, Pavak K. Shah, Yuko Kamikawa, Zhirong Bao

Dev Cell. Author manuscript; available in PMC 2016 Sep 14.

Published in final edited form as: Dev Cell. 2015 Sep 14; 34(5): 592–607. Published online 2015 Aug 27. doi: 10.1016/j.devcel.2015.07.014

PMCID:: PMC4573902

Abstract Article PDF–2.6M

Select item 388762412.

Differential Physiological Roles of ESCRT Complexes in Caenorhabditis elegans

Dong-Wan Kim, Hyun Sung, Donghyuk Shin, Haihong Shen, Joohong Ahnn, Sun-Kyung Lee, Sangho Lee

Mol Cells. 2011 Jun 30; 31(6): 585–592. doi: 10.1007/s10059-011-1045-z

PMCID:: PMC3887624

Abstract Article PDF–1.0M

Select item 355492113.

RNA Targets and Specificity of Staufen, a Double-stranded RNA-binding Protein in Caenorhabditis elegans

Jacqueline Baca LeGendre, Zachary T. Campbell, Peggy Kroll-Conner, Phil Anderson, Judith Kimble, Marvin Wickens

J Biol Chem. 2013 Jan 25; 288(4): 2532–2545. Published online 2012 Nov 29. doi: 10.1074/jbc.M112.397349

PMCID:: PMC3554921

Abstract Article PDF–2.3M

Select item 325597614.

RAB-6.2 and the retromer regulate glutamate receptor recycling through a retrograde pathway

Donglei Zhang, Nora R. Isack, Doreen R. Glodowski, Jie Liu, Carlos Chih-Hsiung Chen, X.Z. Shawn Xu, Barth D. Grant, Christopher Rongo

J Cell Biol. 2012 Jan 9; 196(1): 85–101. doi: 10.1083/jcb.201104141

PMCID:: PMC3255976

Abstract Article PDF–3.7M

Select item 310207715.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 260356416.

Genome-wide RNAi screen and in vivo protein aggregation reporters identify degradation of damaged proteins as an essential hypertonic stress response

Keith P. Choe, Kevin Strange

Am J Physiol Cell Physiol. 2008 Dec; 295(6): C1488–C1498. Published online 2008 Oct 1. doi: 10.1152/ajpcell.00450.2008

PMCID:: PMC2603564

Abstract Article

Select item 259647817.

A protein domain-based interactome network for C. elegans early embryogenesis

Mike Boxem, Zoltan Maliga, Niels Klitgord, Na Li, Irma Lemmens, Miyeko Mana, Lorenzo de Lichtervelde, Joram D. Mul, Diederik van de Peut, Maxime Devos, Nicolas Simonis, Muhammed A. Yildirim, Murat Cokol, Huey-Ling Kao, Anne-Sophie de Smet, Haidong Wang, Anne-Lore Schlaitz, Tong Hao, Stuart Milstein, Changyu Fan, Mike Tipsword, Kevin Drew, Matilde Galli, Kahn Rhrissorrakrai, David Drechsel, Daphne Koller, Frederick P. Roth, Lilia M. Iakoucheva, A. Keith Dunker, Richard Bonneau, Kristin C. Gunsalus, David E. Hill, Fabio Piano, Jan Tavernier, Sander van den Heuvel, Anthony A. Hyman, Marc Vidal

Cell. Author manuscript; available in PMC 2009 Aug 8.

Published in final edited form as: Cell. 2008 Aug 8; 134(3): 534–545. doi: 10.1016/j.cell.2008.07.009

Correction in:: volume 151 on page 1633

PMCID:: PMC2596478

Abstract Article PDF–4.0M

Select item 244165618.

UNC-108/Rab2 Regulates Postendocytic Trafficking in Caenorhabditis elegans

Denise K. Chun, Jason M. McEwen, Michelle Burbea, Joshua M. Kaplan

Mol Biol Cell. 2008 Jul; 19(7): 2682–2695. doi: 10.1091/mbc.E07-11-1120

PMCID:: PMC2441656

Abstract Article PDF–2.3M

Select item 237389719.

A global analysis of genetic interactions in Caenorhabditis elegans

Alexandra B Byrne, Matthew T Weirauch, Victoria Wong, Martina Koeva, Scott J Dixon, Joshua M Stuart, Peter J Roy

J Biol. 2007; 6(3): 8. Published online 2007 Sep 26. doi: 10.1186/jbiol58

PMCID:: PMC2373897

Abstract Article PDF–3.5M

Select item 197853620.

MVB-12, a Fourth Subunit of Metazoan ESCRT-I, Functions in Receptor Downregulation

Anjon Audhya, Ian X. McLeod, John R. Yates, III, Karen Oegema

PLoS One. 2007; 2(9): e956. Published online 2007 Sep 26. doi: 10.1371/journal.pone.0000956

PMCID:: PMC1978536

Abstract Article PDF–580K

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