PMC Links for GEO Profiles (Select 99310716) - PMC

Rizaldy C. Zapata, Maria Carretero, Felipe Castellani Gomes Reis, Besma S. Chaudry, Jachelle Ofrecio, Dinghong Zhang, Roman Sasik, Theodore Ciaraldi, Michael Petrascheck, Olivia Osborn

Nat Commun. 2022; 13: 5092. Published online 2022 Aug 30. doi: 10.1038/s41467-022-32764-5

PMCID:: PMC9427743

Abstract Article PDF–2.5M

Select item 93880984.

trim-21 promotes proteasomal degradation of CED-1 for apoptotic cell clearance in C. elegans

Lei Yuan, Peiyao Li, Huiru Jing, Qian Zheng, Hui Xiao

eLife. 2022; 11: e76436. Published online 2022 Aug 5. doi: 10.7554/eLife.76436

PMCID:: PMC9388098

Abstract Article PDF–17M

Select item 80791515.

Glia actively sculpt sensory neurons by controlled phagocytosis to tune animal behavior

Stephan Raiders, Erik Calvin Black, Andrea Bae, Stephen MacFarlane, Mason Klein, Shai Shaham, Aakanksha Singhvi

eLife. 2021; 10: e63532. Published online 2021 Mar 24. doi: 10.7554/eLife.63532

PMCID:: PMC8079151

Abstract Article PDF–2.6M

Select item 79951766.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 67278037.

ALG-2/AGO-Dependent mir-35 Family Regulates DNA Damage-Induced Apoptosis Through MPK-1/ERK MAPK Signaling Downstream of the Core Apoptotic Machinery in Caenorhabditis elegans

Markus Alexander Doll, Najmeh Soltanmohammadi, Björn Schumacher

Genetics. 2019 Sep; 213(1): 173–194. Published online 2019 Jul 11. doi: 10.1534/genetics.119.302458

PMCID:: PMC6727803

Abstract Article PDF–2.7M

Select item 62165908.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 61071089.

The small GTPase RAB-35 defines a third pathway that is required for the recognition and degradation of apoptotic cells

Ryan Haley, Ying Wang, Zheng Zhou

PLoS Genet. 2018 Aug; 14(8): e1007558. Published online 2018 Aug 23. doi: 10.1371/journal.pgen.1007558

PMCID:: PMC6107108

Abstract Article PDF–5.2M

Select item 607553010.

Combining Human Epigenetics and Sleep Studies in Caenorhabditis elegans: A Cross-Species Approach for Finding Conserved Genes Regulating Sleep

Huiyan Huang, Yong Zhu, Melissa N. Eliot, Valerie S. Knopik, John E. McGeary, Mary A. Carskadon, Anne C. Hart

Sleep. 2017 Jun; 40(6): zsx063. Published online 2017 Apr 18. doi: 10.1093/sleep/zsx063

PMCID:: PMC6075530

Abstract Article PDF–1.6M

Select item 547690611.

Programmed cell clearance: from nematodes to humans

Katharina Klöditz, Yu-Zen Chen, Ding Xue, Bengt Fadeel

Biochem Biophys Res Commun. Author manuscript; available in PMC 2018 Jan 15.

Published in final edited form as: Biochem Biophys Res Commun. 2017 Jan 15; 482(3): 491–497. Published online 2016 Dec 2. doi: 10.1016/j.bbrc.2016.12.005

PMCID:: PMC5476906

Abstract Article PDF–696K

Select item 512986812.

Developmentally programmed germ cell remodeling by endodermal cell cannibalism

Yusuff Abdu, Chelsea Maniscalco, John M. Heddleston, Teng-Leong Chew, Jeremy Nance

Nat Cell Biol. Author manuscript; available in PMC 2017 May 14.

Published in final edited form as: Nat Cell Biol. 2016 Dec; 18(12): 1302–1310. Published online 2016 Nov 14. doi: 10.1038/ncb3439

PMCID:: PMC5129868

Abstract Article PDF–1.6M

Select item 478136213.

Small GTPases.

Erik A Lundquist

WormBook. 2006 : 1–18. Published online 2006 Jan 17. doi: 10.1895/wormbook.1.67.1

PMCID:: PMC4781362

Abstract Article

Select item 478124814.

Programmed cell death.

Barbara Conradt, Ding Xue

WormBook. 2005 : 1–13. Published online 2005 Oct 6. doi: 10.1895/wormbook.1.32.1

PMCID:: PMC4781248

Abstract Article

Select item 478108215.

Genetic dissection of developmental pathways.

Linda S Huang, Paul W Sternberg

WormBook. 2006 : 1–19. Published online 2006 Jun 14. doi: 10.1895/wormbook.1.88.2

PMCID:: PMC4781082

Article

Select item 430645116.

A lysine-rich motif in the phosphatidylserine receptor PSR-1 mediates recognition and removal of apoptotic cells

Hengwen Yang, Yu-Zen Chen, Yi Zhang, Xiaohui Wang, Xiang Zhao, James I. Godfroy, III, Qian Liang, Man Zhang, Tianying Zhang, Quan Yuan, Mary Ann Royal, Monica Driscoll, Ning-Shao Xia, Hang Yin, Ding Xue

Nat Commun. Author manuscript; available in PMC 2015 Jul 7.

Published in final edited form as: Nat Commun. 2015; 6: 5717. Published online 2015 Jan 7. doi: 10.1038/ncomms6717

PMCID:: PMC4306451

Abstract Article PDF–1.9M

Select item 393905617.

Caspase-mediated activation of Caenorhabditis elegans CED-8 promotes apoptosis and phosphatidylserine externalisation

Yu-Zen Chen, James Mapes, Eui-Seung Lee, Riley Robert Skeen-Gaar, Ding Xue

Nat Commun. Author manuscript; available in PMC 2014 May 14.

Published in final edited form as: Nat Commun. 2013; 4: 2726. doi: 10.1038/ncomms3726

PMCID:: PMC3939056

Abstract Article PDF–1.1M

Select item 381617018.

CED-1, CED-7, and TTR-52 act in a pathway to regulate exoplasmic phosphatidylserine expression on apoptotic and phagocytic cells

James Mapes, Yu-Zen Chen, Anna Kim, Shohei Mitani, Byung-Ho Kang, Ding Xue

Curr Biol. Author manuscript; available in PMC 2013 Nov 4.

Published in final edited form as: Curr Biol. 2012 Jul 24; 22(14): 10.1016/j.cub.2012.05.052. Published online 2012 Jun 21. doi: 10.1016/j.cub.2012.05.052

PMCID:: PMC3816170

Abstract Article PDF–2.7M

Select item 378917719.

Cell-nonautonomous inhibition of radiation-induced apoptosis by dynein light chain 1 in Caenorhabditis elegans

T H Morthorst, A Olsen

Cell Death Dis. 2013 Sep; 4(9): e799. Published online 2013 Sep 12. doi: 10.1038/cddis.2013.319

PMCID:: PMC3789177

Abstract Article PDF–1.4M

Select item 365827720.

SH3 interactome conserves general function over specific form

Xiaofeng Xin, David Gfeller, Jackie Cheng, Raffi Tonikian, Lin Sun, Ailan Guo, Lianet Lopez, Alevtina Pavlenco, Adenrele Akintobi, Yingnan Zhang, Jean-François Rual, Bridget Currell, Somasekar Seshagiri, Tong Hao, Xinping Yang, Yun A Shen, Kourosh Salehi-Ashtiani, Jingjing Li, Aaron T Cheng, Dryden Bouamalay, Adrien Lugari, David E Hill, Mark L Grimes, David G Drubin, Barth D Grant, Marc Vidal, Charles Boone, Sachdev S Sidhu, Gary D Bader

Mol Syst Biol. 2013; 9: 652. Published online 2013 Apr 2. doi: 10.1038/msb.2013.9

PMCID:: PMC3658277

Abstract Article PDF–2.3M

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