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Select item 109176601.

Genetic determinants of micronucleus formation in vivo

D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus

Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0

PMCID:: PMC10917660

Abstract Article PDF–4.8M

Select item 108072482.

USP13 regulates cell senescence through mediating MDM2 stability

Jinshan He, Boina Baoyinna, Sarah J. Taleb, Jing Zhao, Yutong Zhao

Life Sci. Author manuscript; available in PMC 2024 Jan 24.

Published in final edited form as: Life Sci. 2023 Oct 15; 331: 122044. Published online 2023 Aug 25. doi: 10.1016/j.lfs.2023.122044

PMCID:: PMC10807248

Abstract Article PDF–1.6M

Select item 107172713.

USP13 drives lung squamous cell carcinoma by switching lung club cell lineage plasticity

Juntae Kwon, Jinmin Zhang, Boram Mok, Samuel Allsup, Chul Kim, Jeffrey Toretsky, Cecil Han

Mol Cancer. 2023; 22: 204. Published online 2023 Dec 13. doi: 10.1186/s12943-023-01892-x

PMCID:: PMC10717271

Abstract Article PDF–8.5M

Select item 103489114.

USP13 deubiquitinates and stabilizes cyclin D1 to promote gastric cancer cell cycle progression and cell proliferation

Cunying Ma, Dandan Wang, Zhuangfei Tian, Wenrong Gao, Yichen Zang, Lilin Qian, Xia Xu, Jihui Jia, Zhifang Liu

Oncogene. 2023; 42(29): 2249–2262. Published online 2023 Jun 13. doi: 10.1038/s41388-023-02739-x

PMCID:: PMC10348911

Abstract Article PDF–7.0M

Select item 102433715.

Deubiquitinase USP13 promotes extracellular matrix expression by stabilizing Smad4 in lung fibroblast cells

XINXIN LIAO, YANHUI LI, JIA LIU, YINGZE ZHANG, JIANGNING TAN, DANIEL J. KASS, MAURICIO ROJAS, RAMA K. MALLAMPALLI, JING ZHAO, YUTONG ZHAO

Transl Res. Author manuscript; available in PMC 2023 Jun 6.

Published in final edited form as: Transl Res. 2020 Sep; 223: 15–24. Published online 2020 May 17. doi: 10.1016/j.trsl.2020.05.004

PMCID:: PMC10243371

Abstract Article PDF–1.2M

Select item 102058586.

USP13 promotes breast cancer metastasis through FBXL14-induced Twist1 ubiquitination

Binggong Zhao, Wei Huo, Xiaomin Yu, Xiaoxia Shi, Linlin Lv, Yuxi Yang, Jie Kang, Shujing Li, Huijian Wu

Cell Oncol (Dordr) 2023; 46(3): 717–733. Published online 2023 Feb 3. doi: 10.1007/s13402-023-00779-9

PMCID:: PMC10205858

Abstract Article PDF–15M

Select item 100124607.

Exosomal USP13 derived from microvascular endothelial cells regulates immune microenvironment and improves functional recovery after spinal cord injury by stabilizing IκBα

Xuhui Ge, Zheng Zhou, Siting Yang, Wu Ye, Zhuanghui Wang, Jiaxing Wang, Chenyu Xiao, Min Cui, Jiawen Zhou, Yufeng Zhu, Rixiao Wang, Yu Gao, Haofan Wang, Pengyu Tang, Xuhui Zhou, Ce Wang, Weihua Cai

Cell Biosci. 2023; 13: 55. Published online 2023 Mar 13. doi: 10.1186/s13578-023-01011-9

PMCID:: PMC10012460

Abstract Article PDF–7.6M

Select item 93304748.

Inhibition of Ubiquitin-Specific Protease-13 Improves Behavioral Performance in Alpha-Synuclein Expressing Mice

Xiaoguang Liu, Kaluvu Balaraman, Ciarán C. Lynch, Michaeline Hebron, Priya Ketankumar Shah, Shicheng Hu, Max Stevenson, Christian Wolf, Charbel Moussa

Int J Mol Sci. 2022 Aug; 23(15): 8131. Published online 2022 Jul 23. doi: 10.3390/ijms23158131

PMCID:: PMC9330474

Abstract Article PDF–2.2M

Select item 89565119.

USP13 promotes development and metastasis of high-grade serous ovarian carcinoma in a novel mouse model

Juntae Kwon, Hyeongjwa Choi, Anna D. Ware, Bernadette Cecilia Morillo, Haiyang Wang, Kerrie B. Bouker, Xiongbin Lu, Todd Waldman, Cecil Han

Oncogene. 2022; 41(13): 1974–1985. Published online 2022 Feb 16. doi: 10.1038/s41388-022-02224-x

PMCID:: PMC8956511

Abstract Article PDF–14M

Select item 857709910.

Inhibition of ubiquitin-specific protease 13-mediated degradation of Raf1 kinase by Spautin-1 has opposing effects in naïve and primed pluripotent stem cells

Xin Wang, Xiaoxiao Wang, Xinbao Zhang, Yan Zhang, Zhenhua Zhu, Yuting Li, Meng Zhang, Junxiang Ji, Yang Yu, Shou-Dong Ye

J Biol Chem. 2021 Nov; 297(5): 101332. Published online 2021 Oct 22. doi: 10.1016/j.jbc.2021.101332

PMCID:: PMC8577099

Abstract Article PDF–6.0M

Select item 798773011.

Lipopolysaccharide reduces USP13 stability through c-Jun N-terminal kinase activation in Kupffer cells

Fan Yu, Yanhui Li, Qinmao Ye, Jiaxing Miao, Sarah J Taleb, Yutong Zhao, Jing Zhao

J Cell Physiol. Author manuscript; available in PMC 2022 Jun 1.

Published in final edited form as: J Cell Physiol. 2021 Jun; 236(6): 4360–4368. Published online 2020 Nov 10. doi: 10.1002/jcp.30153

PMCID:: PMC7987730

Abstract Article PDF–1.5M

Select item 793877012.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 664208013.

The deubiquitinase USP13 stabilizes the anti-inflammatory receptor IL-1R8/Sigirr to suppress lung inflammation

Lian Li, Jianxin Wei, Shuang Li, Anastasia M. Jacko, Nathaniel M. Weathington, Rama K. Mallampalli, Jing Zhao, Yutong Zhao

EBioMedicine. 2019 Jul; 45: 553–562. Published online 2019 Jun 14. doi: 10.1016/j.ebiom.2019.06.011

PMCID:: PMC6642080

Abstract Article PDF–2.7M

Select item 592777114.

Mfn2 ubiquitination by PINK1/parkin gates the p97-dependent release of ER from mitochondria to drive mitophagy

Gian-Luca McLelland, Thomas Goiran, Wei Yi, Geneviève Dorval, Carol X Chen, Nadine D Lauinger, Andrea I Krahn, Sepideh Valimehr, Aleksandar Rakovic, Isabelle Rouiller, Thomas M Durcan, Jean-François Trempe, Edward A Fon

eLife. 2018; 7: e32866. Published online 2018 Apr 20. doi: 10.7554/eLife.32866

PMCID:: PMC5927771

Abstract Article PDF–9.1M

Select item 545751515.

USP13 negatively regulates antiviral responses by deubiquitinating STING

He Sun, Qiang Zhang, Ying-Ying Jing, Man Zhang, Hai-Ying Wang, Zeng Cai, Tianzi Liuyu, Zhi-Dong Zhang, Tian-Chen Xiong, Yan Wu, Qi-Yun Zhu, Jing Yao, Hong-Bing Shu, Dandan Lin, Bo Zhong

Nat Commun. 2017; 8: 15534. Published online 2017 May 23. doi: 10.1038/ncomms15534

PMCID:: PMC5457515

Abstract Article PDF–1.7M

Select item 357241016.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 317805917.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253418.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 31099219.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098020.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

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