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Items: 1 to 20 of 45

1.
Transcriptome analysis reveals temporally regulated genetic networks during Drosophila border cell collective migration
Emily Burghardt, Jessica Rakijas, Antariksh Tyagi, Pralay Majumder, Bradley J.S.C. Olson, Jocelyn A. McDonald
BMC Genomics. 2023; 24: 728. Published online 2023 Dec 1. doi: 10.1186/s12864-023-09839-8
PMCID:
PMC10693066
AbstractArticlePDF–12M
2.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
3.
An expanded toolkit for Drosophila gene tagging using synthesized homology donor constructs for CRISPR-mediated homologous recombination
Oguz Kanca, Jonathan Zirin, Yanhui Hu, Burak Tepe, Debdeep Dutta, Wen-Wen Lin, Liwen Ma, Ming Ge, Zhongyuan Zuo, Lu-Ping Liu, Robert W Levis, Norbert Perrimon, Hugo J Bellen
eLife. 2022; 11: e76077. Published online 2022 Jun 20. doi: 10.7554/eLife.76077
PMCID:
PMC9239680
AbstractArticlePDF–1.2M
4.
A single-cell atlas reveals unanticipated cell type complexity in Drosophila ovaries
Maija Slaidina, Selena Gupta, Torsten U. Banisch, Ruth Lehmann
Genome Res. 2021 Oct; 31(10): 1938–1951. doi: 10.1101/gr.274340.120
PMCID:
PMC8494228
AbstractArticlePDF–15M
5.
A transcriptomic taxonomy of Drosophila circadian neurons around the clock
Dingbang Ma, Dariusz Przybylski, Katharine C Abruzzi, Matthias Schlichting, Qunlong Li, Xi Long, Michael Rosbash
eLife. 2021; 10: e63056. Published online 2021 Jan 13. doi: 10.7554/eLife.63056
PMCID:
PMC7837698
AbstractArticlePDF–3.2M
6.
Transcription Factor Binding Affinities and DNA Shape Readout
Max Schnepf, Marc von Reutern, Claudia Ludwig, Christophe Jung, Ulrike Gaul
iScience. 2020 Nov 20; 23(11): 101694. Published online 2020 Oct 15. doi: 10.1016/j.isci.2020.101694
PMCID:
PMC7607496
AbstractArticlePDF–5.2M
7.
Ultraconserved Non-coding DNA Within Diptera and Hymenoptera
Thomas Brody, Amarendra Yavatkar, Alexander Kuzin, Ward F. Odenwald
G3 (Bethesda) 2020 Sep; 10(9): 3015–3024. Published online 2020 Jun 29. doi: 10.1534/g3.120.401502
PMCID:
PMC7466983
AbstractArticlePDF–2.9M
8.
Generation of a versatile BiFC ORFeome library for analyzing protein–protein interactions in live Drosophila
Johannes Bischof, Marilyne Duffraisse, Edy Furger, Leiore Ajuria, Guillaume Giraud, Solene Vanderperre, Rachel Paul, Mikael Björklund, Damien Ahr, Alexis W Ahmed, Lionel Spinelli, Christine Brun, Konrad Basler, Samir Merabet
eLife. 2018; 7: e38853. Published online 2018 Sep 24. doi: 10.7554/eLife.38853
PMCID:
PMC6177257
AbstractArticlePDF–4.9M
9.
The impact of genome variation and diet on the metabolic phenotype and microbiome composition of Drosophila melanogaster
Lisa Jehrke, Fiona A. Stewart, Andrea Droste, Mathias Beller
Sci Rep. 2018; 8: 6215. Published online 2018 Apr 18. doi: 10.1038/s41598-018-24542-5
PMCID:
PMC5906449
AbstractArticlePDF–4.5M
10.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
11.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
12.
The E3 ubiquitin ligase Nedd4/Nedd4L is directly regulated by microRNA 1
Jun-yi Zhu, Amy Heidersbach, Irfan S. Kathiriya, Bayardo I. Garay, Kathryn N. Ivey, Deepak Srivastava, Zhe Han, Isabelle N. King
Development. 2017 Mar 1; 144(5): 866–875. doi: 10.1242/dev.140368
PMCID:
PMC5374346
AbstractArticle
13.
The glia of the adult Drosophila nervous system
Malte C. Kremer, Christophe Jung, Sara Batelli, Gerald M. Rubin, Ulrike Gaul
Glia. 2017 Apr; 65(4): 606–638. Published online 2017 Jan 30. doi: 10.1002/glia.23115
PMCID:
PMC5324652
AbstractArticlePDF–4.4M
14.
Phenotypes Associated with Second Chromosome P Element Insertions in Drosophila melanogaster
Lily Kahsai, Gillian H. Millburn, Kevin R. Cook
G3 (Bethesda) 2016 Aug; 6(8): 2665–2670. Published online 2016 Jun 10. doi: 10.1534/g3.116.030940
PMCID:
PMC4978919
AbstractArticlePDF–613K
15.
Homeodomain proteins: an update
Thomas R. Bürglin, Markus Affolter
Chromosoma. 2016; 125: 497–521. Published online 2015 Oct 13. doi: 10.1007/s00412-015-0543-8
PMCID:
PMC4901127
AbstractArticlePDF–3.1M
16.
Mapping Chromatic Pathways in the Drosophila Visual System
Tzu-Yang Lin, Jiangnan Luo, Kazunori Shinomiya, Chun-Yuan Ting, Zhiyuan Lu, Ian A. Meinertzhagen, Chi-Hon Lee
J Comp Neurol. Author manuscript; available in PMC 2017 Feb 1.
Published in final edited form as: J Comp Neurol. 2016 Feb 1; 524(2): 213–227. Published online 2015 Aug 11. doi: 10.1002/cne.23857
PMCID:
PMC4678965
AbstractArticlePDF–3.2M
17.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
18.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
19.
Genetic Tools for the Analysis of Drosophila Stomatogastric Nervous System Development
Karla Hernández, Logan G. Myers, Micah Bowser, Thomas Kidd
PLoS One. 2015; 10(6): e0128290. Published online 2015 Jun 8. doi: 10.1371/journal.pone.0128290
PMCID:
PMC4460011
AbstractArticlePDF–16M
20.
Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism
Charles Blatti, Majid Kazemian, Scot Wolfe, Michael Brodsky, Saurabh Sinha
Nucleic Acids Res. 2015 Apr 30; 43(8): 3998–4012. Published online 2015 Mar 19. doi: 10.1093/nar/gkv195
PMCID:
PMC4417154
AbstractArticlePDF–3.1M

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