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Items: 1 to 20 of 28

1.
An expanded toolkit for Drosophila gene tagging using synthesized homology donor constructs for CRISPR-mediated homologous recombination
Oguz Kanca, Jonathan Zirin, Yanhui Hu, Burak Tepe, Debdeep Dutta, Wen-Wen Lin, Liwen Ma, Ming Ge, Zhongyuan Zuo, Lu-Ping Liu, Robert W Levis, Norbert Perrimon, Hugo J Bellen
eLife. 2022; 11: e76077. Published online 2022 Jun 20. doi: 10.7554/eLife.76077
PMCID:
PMC9239680
AbstractArticlePDF–1.2M
2.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
3.
The mapping of Drosophila melanogaster mutant A.4.4
Kayla L. Bieser, Joyce Stamm, Ayala A. Aldo, Suneil Bhaskara, Makayla Clairborne, Joselyn N. Coronel Gómez, Ron Dean, Aaron Dowell, Evan Dowell, Mathew Eissa, Ahmad A. Fawaz, Michael M. Fouad-Meshriky, Dustin Godoy, Krista Gonzalez, Malak K. Hachem, Malak F. Hammoud, Anthony Huffman, Hunter Ingram, Alex B. Jackman, Bibek Karki, Natalia Khalil, Houda Khalil, Tran Khanh Ha, Arjun Kharel, Izabell Kobylarz, Hunter Lomprey, Adam Lonnberg, Safa Mahbuba, Hend Massarani, Madeline Minster, Krystina Molina, Lynette Molitor, Taylor Murray, Payal M. Patel, Sydney Pechulis, Architha Raja, Gladys Rastegari, Skylar Reeves, Niveda Sabu, Rafael Salazar, Devan Schulert, Matthew D. Senopole, Kristen Sportiello, Claudia Torres, Jade Villalobos, Joseph Wu, Stacy Zeigler, Jacob D. Kagey
MicroPubl Biol. 2018; 2018: 10.17912/micropub.biology.000069. Published online 2018 Dec 17. doi: 10.17912/micropub.biology.000069
Correction in:
MicroPubl Biol. 2019; 2019: 10.17912/micropub.biology.000106.
PMCID:
PMC7252270
ArticlePDF–583K
4.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
5.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
6.
Seizure suppression through manipulating splicing of a voltage-gated sodium channel
Wei-Hsiang Lin, Miaomiao He, Richard A. Baines
Brain. 2015 Apr; 138(4): 891–901. Published online 2015 Feb 12. doi: 10.1093/brain/awv012
PMCID:
PMC5014079
AbstractArticlePDF–541K
7.
Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome
Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair
Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999
PMCID:
PMC4928047
AbstractArticlePDF–3.1M
8.
Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach
Flavio Pazos Obregón, Cecilia Papalardo, Sebastián Castro, Gustavo Guerberoff, Rafael Cantera
BMC Genomics. 2015; 16(1): 694. Published online 2015 Sep 15. doi: 10.1186/s12864-015-1888-3
PMCID:
PMC4570697
AbstractArticlePDF–2.0M
9.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
10.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
11.
Transcription Factor Networks in Drosophila melanogaster
David Y. Rhee, Dong-Yeon Cho, Bo Zhai, Matthew Slattery, Lijia Ma, Julian Mintseris, Christina Y. Wong, Kevin P. White, Susan E. Celniker, Teresa M. Przytycka, Steven P. Gygi, Robert A. Obar, Spyros Artavanis-Tsakonas
Cell Rep. Author manuscript; available in PMC 2015 Apr 20.
Published in final edited form as: Cell Rep. 2014 Sep 25; 8(6): 2031–2043. Published online 2014 Sep 18. doi: 10.1016/j.celrep.2014.08.038
PMCID:
PMC4403667
AbstractArticlePDF–1.3M
12.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
13.
Genome-Wide RNAi Screen Identifies Broadly-Acting Host Factors That Inhibit Arbovirus Infection
Ari Yasunaga, Sheri L. Hanna, Jianqing Li, Hyelim Cho, Patrick P. Rose, Anna Spiridigliozzi, Beth Gold, Michael S. Diamond, Sara Cherry
PLoS Pathog. 2014 Feb; 10(2): e1003914. Published online 2014 Feb 13. doi: 10.1371/journal.ppat.1003914
PMCID:
PMC3923753
AbstractArticlePDF–1.6M
14.
The Genetic Makeup of the Drosophila piRNA Pathway
Dominik Handler, Katharina Meixner, Manfred Pizka, Kathrin Lauss, Christopher Schmied, Franz Sebastian Gruber, Julius Brennecke
Mol Cell. 2013 Jun 6; 50(5): 762–777. doi: 10.1016/j.molcel.2013.04.031
PMCID:
PMC3679447
AbstractArticle
15.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
16.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
17.
A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionary-conserved pain gene
G. Gregory Neely, Andreas Hess, Michael Costigan, Alex C. Keene, Spyros Goulas, Michiel Langeslag, Robert S Griffin, Inna Belfer, Feng Dai, Shad Smith, Luda Diatchenko, Vaijayanti Gupta, Cui-ping Xia, Sabina Amann, Silke Kreitz, Cornelia Heindl-Erdmann, Susanne Wolz, Cindy V. Ly, Suchir Arora, Rinku Sarangi, Debasis Dan, Maria Novatchkova, Mark Rosenzweig, Dustin Gibson, Darwin Truong, Daniel Schramek, Tamara Zoranovic, Shane J. F. Cronin, Belinda Angjeli, Kay Brune, Georg Dietzl, William Maixner, Arabella Meixner, Winston Thomas, J. Andrew Pospisilik, Mattias Alenius, Michaela Kress, Sai Subramaniam, Paul A. Garrity, Hugo J. Bellen, Clifford J. Woolf, Josef M. Penninger
Cell. Author manuscript; available in PMC 2011 Nov 12.
Published in final edited form as: Cell. 2010 Nov 12; 143(4): 628–638. doi: 10.1016/j.cell.2010.09.047
PMCID:
PMC3040441
AbstractArticlePDF–2.0M
18.
The Nucleosome Remodeling Factor ISWI Functionally Interacts With an Evolutionarily Conserved Network of Cellular Factors
Walter Arancio, Maria C. Onorati, Giosalba Burgio, Marianna Collesano, Antonia M. R. Ingrassia, Swonild I. Genovese, Manolis Fanto, Davide F. V. Corona
Genetics. 2010 May; 185(1): 129–140. doi: 10.1534/genetics.110.114256
PMCID:
PMC2870949
AbstractArticlePDF–8.6M
19.
Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin
Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker
Science. Author manuscript; available in PMC 2010 Feb 19.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816
PMCID:
PMC2825053
AbstractArticlePDF–858K
20.
The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin
Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen
Science. Author manuscript; available in PMC 2010 Feb 10.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815
Correction in:
volume 317 on page 1325
PMCID:
PMC2819280
AbstractArticlePDF–1.3M

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