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Items: 18

1.
USP7 and VCPFAF1 define the SUMO/Ubiquitin landscape at the DNA replication fork
André Franz, Pablo Valledor, Patricia Ubieto-Capella, Domenic Pilger, Antonio Galarreta, Vanesa Lafarga, Alejandro Fernández-Llorente, Guillermo de la Vega-Barranco, Fabian den Brave, Thorsten Hoppe, Oscar Fernandez-Capetillo, Emilio Lecona
Cell Rep. 2021 Oct 12; 37(2): 109819. Published online 2021 Oct 12. doi: 10.1016/j.celrep.2021.109819
PMCID:
PMC8527565
AbstractArticle
2.
TIMELESS‐TIPIN and UBXN‐3 promote replisome disassembly during DNA replication termination in Caenorhabditis elegans
Yisui Xia, Ryo Fujisawa, Tom D Deegan, Remi Sonneville, Karim P M Labib
EMBO J. 2021 Sep 1; 40(17): e108053. Published online 2021 Jul 16. doi: 10.15252/embj.2021108053
PMCID:
PMC8408604
AbstractArticlePDF–1.9M
3.
Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules
Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus
eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833
PMCID:
PMC8331183
AbstractArticlePDF–8.5M
4.
EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes
Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili
Nat Methods. Author manuscript; available in PMC 2021 Mar 26.
Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4
PMCID:
PMC7995176
AbstractArticlePDF–1.0M
5.
Biogenic amine neurotransmitters promote eicosanoid production and protein homeostasis
Kishore K Joshi, Tarmie L Matlack, Stephanie Pyonteck, Mehul Vora, Ralph Menzel, Christopher Rongo
EMBO Rep. 2021 Mar 3; 22(3): e51063. Published online 2021 Jan 20. doi: 10.15252/embr.202051063
PMCID:
PMC7926251
AbstractArticlePDF–1.6M
6.
Mechanisms of eukaryotic replisome disassembly
Sara Priego Moreno, Agnieszka Gambus
Biochem Soc Trans. 2020 Jun 30; 48(3): 823–836. Published online 2020 Jun 3. doi: 10.1042/BST20190363
PMCID:
PMC7329349
AbstractArticlePDF–1.8M
7.
Loss of an H3K9me anchor rescues laminopathy-linked changes in nuclear organization and muscle function in an Emery-Dreifuss muscular dystrophy model
Jennifer C. Harr, Christoph D. Schmid, Celia Muñoz-Jiménez, Raquel Romero-Bueno, Véronique Kalck, Adriana Gonzalez-Sandoval, Michael H. Hauer, Jan Padeken, Peter Askjaer, Anna Mattout, Susan M. Gasser
Genes Dev. 2020 Apr 1; 34(7-8): 560–579. doi: 10.1101/gad.332213.119
PMCID:
PMC7111258
AbstractArticlePDF–12M
8.
OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes
Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye
Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307
PMCID:
PMC6216590
AbstractArticlePDF–1.4M
9.
CUL-2LRR-1 and UBXN-3/FAF1 drive replisome disassembly during DNA replication termination and mitosis
Remi Sonneville, Sara Priego Moreno, Axel Knebel, Clare Johnson, C. James Hastie, Anton Gartner, Agnieszka Gambus, Karim Labib
Nat Cell Biol. Author manuscript; available in PMC 2017 Oct 3.
Published in final edited form as: Nat Cell Biol. 2017 May; 19(5): 468–479. Published online 2017 Apr 3. doi: 10.1038/ncb3500
PMCID:
PMC5410169
AbstractArticlePDF–2.6M
10.
Chromatin-associated degradation is defined by UBXN-3/FAF1 to safeguard DNA replication fork progression
André Franz, Paul A. Pirson, Domenic Pilger, Swagata Halder, Divya Achuthankutty, Hamid Kashkar, Kristijan Ramadan, Thorsten Hoppe
Nat Commun. 2016; 7: 10612. Published online 2016 Feb 4. doi: 10.1038/ncomms10612
Correction in:
Nat Commun. 2016; 7: 11593.
PMCID:
PMC4743000
AbstractArticlePDF–3.6M
11.
CDC-48/p97 Coordinates CDT-1 Degradation with GINS Chromatin Dissociation to Ensure Faithful DNA Replication
André Franz, Michael Orth, Paul A. Pirson, Remi Sonneville, J. Julian Blow, Anton Gartner, Olaf Stemmann, Thorsten Hoppe
Mol Cell. Author manuscript; available in PMC 2012 Aug 28.
Published in final edited form as: Mol Cell. 2011 Oct 7; 44(1): 85–96. doi: 10.1016/j.molcel.2011.08.028
PMCID:
PMC3428722
AbstractArticlePDF–3.2M
12.
OrthoList: A Compendium of C. elegans Genes with Human Orthologs
Daniel D. Shaye, Iva Greenwald
PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085
Correction in:
PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.
PMCID:
PMC3102077
AbstractArticlePDF–530K
13.
Empirically-controlled mapping of the Caenorhabditis elegans protein-protein interactome network
Nicolas Simonis, Jean-François Rual, Anne-Ruxandra Carvunis, Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie M Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amélie Dricot, Muhammed A Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin Sook Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin C Gunsalus, Michael E Cusick, David E Hill, Jan Tavernier, Frederick P Roth, Marc Vidal
Nat Methods. Author manuscript; available in PMC 2011 Mar 15.
Published in final edited form as: Nat Methods. 2009 Jan; 6(1): 47–54. doi: 10.1038/nmeth.1279
PMCID:
PMC3057923
AbstractArticlePDF–3.0M
14.
A protein domain-based interactome network for C. elegans early embryogenesis
Mike Boxem, Zoltan Maliga, Niels Klitgord, Na Li, Irma Lemmens, Miyeko Mana, Lorenzo de Lichtervelde, Joram D. Mul, Diederik van de Peut, Maxime Devos, Nicolas Simonis, Muhammed A. Yildirim, Murat Cokol, Huey-Ling Kao, Anne-Sophie de Smet, Haidong Wang, Anne-Lore Schlaitz, Tong Hao, Stuart Milstein, Changyu Fan, Mike Tipsword, Kevin Drew, Matilde Galli, Kahn Rhrissorrakrai, David Drechsel, Daphne Koller, Frederick P. Roth, Lilia M. Iakoucheva, A. Keith Dunker, Richard Bonneau, Kristin C. Gunsalus, David E. Hill, Fabio Piano, Jan Tavernier, Sander van den Heuvel, Anthony A. Hyman, Marc Vidal
Cell. Author manuscript; available in PMC 2009 Aug 8.
Published in final edited form as: Cell. 2008 Aug 8; 134(3): 534–545. doi: 10.1016/j.cell.2008.07.009
Correction in:
volume 151 on page 1633
PMCID:
PMC2596478
AbstractArticlePDF–4.0M
15.
Cell cycle progression requires the CDC-48UFD−1/NPL−4 complex for efficient DNA replication
Julien Mouysset, Alexandra Deichsel, Sandra Moser, Carsten Hoege, Anthony A. Hyman, Anton Gartner, Thorsten Hoppe
Proc Natl Acad Sci U S A. 2008 Sep 2; 105(35): 12879–12884. Published online 2008 Aug 26. doi: 10.1073/pnas.0805944105
PMCID:
PMC2529102
AbstractArticlePDF–1.9M
16.
A Map of the Interactome Network of the Metazoan C. elegans
Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2006 Dec 14.
Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403
PMCID:
PMC1698949
AbstractArticlePDF–1.4M
17.
Involvement of the Actin Cytoskeleton and Homotypic Membrane Fusion in ER Dynamics in Caenorhabditis elegans
Dmitry Poteryaev, Jayne M. Squirrell, Jay M. Campbell, John G. White, Anne Spang
Mol Biol Cell. 2005 May; 16(5): 2139–2153. doi: 10.1091/mbc.E04-08-0726
PMCID:
PMC1087224
AbstractArticlePDF–1.4M
18.
Identification of Potential Interaction Networks Using Sequence-Based Searches for Conserved Protein-Protein Interactions or “Interologs”
Lisa R. Matthews, Philippe Vaglio, Jérôme Reboul, Hui Ge, Brian P. Davis, James Garrels, Sylvie Vincent, Marc Vidal
Genome Res. 2001 Dec; 11(12): 2120–2126. doi: 10.1101/gr.205301
PMCID:
PMC311221
AbstractArticlePDF–510K

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