PMC Links for GEO Profiles (Select 90681517) - PMC

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Items: 14

Select item 63612311.

TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations

Haiming Tang, Robert D Finn, Paul D Thomas

Bioinformatics. 2019 Feb 1; 35(3): 518–520. Published online 2018 Jul 19. doi: 10.1093/bioinformatics/bty625

PMCID:: PMC6361231

Article PDF–1.0M

Select item 62064762.

Polymorphisms in Rhesus Macaque Tetherin Are Associated with Differences in Acute Viremia in Simian Immunodeficiency Virus Δnef-Infected Animals

Sanath Kumar Janaka, Aidin Tavakoli-Tameh, William J. Neidermyer, Jr., Ruth Serra-Moreno, James A. Hoxie, Ronald C. Desrosiers, R. Paul Johnson, Jeffrey D. Lifson, Steven M. Wolinsky, David T. Evans

J Virol. 2018 Nov 15; 92(22): e00542-18. Prepublished online 2018 Aug 22. Published online 2018 Oct 29. doi: 10.1128/JVI.00542-18

PMCID:: PMC6206476

Article PDF–2.0M

Select item 46413943.

Increased BST2 expression during simian immunodeficiency virus infection is not a determinant of disease progression in rhesus monkeys

Bianka Mussil, Aneela Javed, Katharina Töpfer, Ulrike Sauermann, Sieghart Sopper

Retrovirology. 2015; 12: 92. Published online 2015 Nov 10. doi: 10.1186/s12977-015-0219-8

PMCID:: PMC4641394

Article PDF–1.4M

Select item 42146064.

A new rhesus macaque assembly and annotation for next-generation sequencing analyses

Aleksey V Zimin, Adam S Cornish, Mnirnal D Maudhoo, Robert M Gibbs, Xiongfei Zhang, Sanjit Pandey, Daniel T Meehan, Kristin Wipfler, Steven E Bosinger, Zachary P Johnson, Gregory K Tharp, Guillaume Marçais, Michael Roberts, Betsy Ferguson, Howard S Fox, Todd Treangen, Steven L Salzberg, James A Yorke, Robert B Norgren,, Jr

Biol Direct. 2014; 9: 20. Published online 2014 Oct 14. doi: 10.1186/1745-6150-9-20

PMCID:: PMC4214606

Article PDF–2.0M

Select item 38382495.

Functional Antagonism of Rhesus Macaque and Chimpanzee BST-2 by HIV-1 Vpu Is Mediated by Cytoplasmic Domain Interactions

Takeshi Yoshida, Yoshio Koyanagi, Klaus Strebel

J Virol. 2013 Dec; 87(24): 13825–13836. doi: 10.1128/JVI.02567-13

PMCID:: PMC3838249

Article PDF–1.5M

Select item 38382276.

Tetherin Upregulation in Simian Immunodeficiency Virus-Infected Macaques

Andrew R. Rahmberg, William J. Neidermyer, Jr., Matthew W. Breed, Xavier Alvarez, Cecily C. Midkiff, Michael Piatak, Jr., Jeffrey D. Lifson, David T. Evans

J Virol. 2013 Dec; 87(24): 13917–13921. doi: 10.1128/JVI.01757-13

PMCID:: PMC3838227

Article PDF–1.1M

Select item 37088717.

Tetherin/BST-2 Antagonism by Nef Depends on a Direct Physical Interaction between Nef and Tetherin, and on Clathrin-mediated Endocytosis

Ruth Serra-Moreno, Kerstin Zimmermann, Lawrence J. Stern, David T. Evans

PLoS Pathog. 2013 Jul; 9(7): e1003487. Published online 2013 Jul 11. doi: 10.1371/journal.ppat.1003487

PMCID:: PMC3708871

Article PDF–7.0M

Select item 32704758.

Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation

Sarah Burge, Elizabeth Kelly, David Lonsdale, Prudence Mutowo-Muellenet, Craig McAnulla, Alex Mitchell, Amaia Sangrador-Vegas, Siew-Yit Yong, Nicola Mulder, Sarah Hunter

Database (Oxford) 2012; 2012: bar068. Published online 2012 Feb 1. doi: 10.1093/database/bar068

PMCID:: PMC3270475

Article PDF–361K

Select item 30239779.

Compensatory Changes in the Cytoplasmic Tail of gp41 Confer Resistance to Tetherin/BST-2 in a Pathogenic Nef-deleted SIV

Ruth Serra-Moreno, Bin Jia, Matthew Breed, Xavier Alvarez, David T. Evans

Cell Host Microbe. Author manuscript; available in PMC 2012 Jan 20.

Published in final edited form as: Cell Host Microbe. 2011 Jan 20; 9(1): 46–57. doi: 10.1016/j.chom.2010.12.005

PMCID:: PMC3023977

Article PDF–3.4M

Select item 289823910.

Ancient Adaptive Evolution of Tetherin Shaped the Functions of Vpu and Nef in Human Immunodeficiency Virus and Primate Lentiviruses

Efrem S. Lim, Harmit S. Malik, Michael Emerman

J Virol. 2010 Jul; 84(14): 7124–7134. Published online 2010 May 5. doi: 10.1128/JVI.00468-10

PMCID:: PMC2898239

Article PDF–2.1M

Select item 285209711.

Nef proteins from simian immunodeficiency viruses are tetherin antagonists

Fengwen Zhang, Sam J. Wilson, Wilmina Langford, Beatriz Virgen, Devon Gregory, Marc Johnson, Jan Munch, Frank Kirchhoff, Paul D. Bieniasz, Theodora Hatziioannou

Cell Host Microbe. Author manuscript; available in PMC 2010 Apr 9.

Published in final edited form as: Cell Host Microbe. 2009 Jul 23; 6(1): 54–67. Published online 2009 Jun 4. doi: 10.1016/j.chom.2009.05.008

PMCID:: PMC2852097

Article PDF–2.1M

Select item 279162812.

Simian immunodeficiency virus envelope glycoprotein counteracts tetherin/BST-2/CD317 by intracellular sequestration

Ravindra K. Gupta, Petra Mlcochova, Annegret Pelchen-Matthews, Sarah J. Petit, Giada Mattiuzzo, Deenan Pillay, Yasuhiro Takeuchi, Mark Marsh, Greg J. Towers

Proc Natl Acad Sci U S A. 2009 Dec 8; 106(49): 20889–20894. Published online 2009 Oct 28. doi: 10.1073/pnas.0907075106

PMCID:: PMC2791628

Article PDF–2.0M

Select item 267368613.

Species-Specific Activity of SIV Nef and HIV-1 Vpu in Overcoming Restriction by Tetherin/BST2

Bin Jia, Ruth Serra-Moreno, William Neidermyer, Jr., Andrew Rahmberg, John Mackey, Ismael Ben Fofana, Welkin E. Johnson, Susan Westmoreland, David T. Evans

PLoS Pathog. 2009 May; 5(5): e1000429. Published online 2009 May 15. doi: 10.1371/journal.ppat.1000429