PMC Links for GEO Profiles (Select 88109280) - PMC

Select item 54024461.

Nit1 is a metabolite repair enzyme that hydrolyzes deaminated glutathione

Alessio Peracchi, Maria Veiga-da-Cunha, Tomiko Kuhara, Kenneth W. Ellens, Nicole Paczia, Vincent Stroobant, Agnieszka K. Seliga, Simon Marlaire, Stephane Jaisson, Guido T. Bommer, Jin Sun, Kay Huebner, Carole L. Linster, Arthur J. L. Cooper, Emile Van Schaftingen

Proc Natl Acad Sci U S A. 2017 Apr 18; 114(16): E3233–E3242. Published online 2017 Apr 3. doi: 10.1073/pnas.1613736114

PMCID:: PMC5402446

Abstract Article PDF–979K

Select item 50082922.

Nitrilase 1 modulates lung tumor progression in vitro and in vivo

Yong Antican Wang, Yunguang Sun, Justin M. Le Blanc, Charalambos Solomides, Tingting Zhan, Bo Lu

Oncotarget. 2016 Apr 19; 7(16): 21381–21392. Published online 2016 Mar 10. doi: 10.18632/oncotarget.7820

PMCID:: PMC5008292

Abstract Article PDF–5.3M

Select item 31780593.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 30472374.

Effect of zinc supplementation on N-nitrosomethylbenzylamine-induced forestomach tumor development and progression in tumor suppressor-deficient mouse strains

Jin Sun, James Liu, Xueliang Pan, Donald Quimby, Nicola Zanesi, Teresa Druck, Gerd P. Pfeifer, Carlo M. Croce, Louise Y. Fong, Kay Huebner

Carcinogenesis. 2011 Mar; 32(3): 351–358. Published online 2010 Nov 19. doi: 10.1093/carcin/bgq251

PMCID:: PMC3047237

Abstract Article PDF–1.3M

Select item 30225345.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 27788446.

A mitochondrial protein compendium elucidates complex I disease biology

David J. Pagliarini, Sarah E. Calvo, Betty Chang, Sunil A. Sheth, Scott B. Vafai, Shao-En Ong, Geoffrey A. Walford, Canny Sugiana, Avihu Boneh, William K. Chen, David E. Hill, Marc Vidal, James G. Evans, David R. Thorburn, Steven A. Carr, Vamsi K. Mootha

Cell. Author manuscript; available in PMC 2009 Nov 18.

Published in final edited form as: Cell. 2008 Jul 11; 134(1): 112–123. doi: 10.1016/j.cell.2008.06.016

PMCID:: PMC2778844

Abstract Article PDF–1.2M

Select item 27627847.

Nit1 and Fhit tumor suppressor activities are additive

Jin Sun, Hiroshi Okumura, Martha Yearsley, Wendy Frankel, Louise Y. Fong, Teresa Druck, Kay Huebner

J Cell Biochem. Author manuscript; available in PMC 2010 Aug 15.

Published in final edited form as: J Cell Biochem. 2009 Aug 15; 107(6): 1097–1106. doi: 10.1002/jcb.22207

PMCID:: PMC2762784

Abstract Article PDF–2.3M

Select item 26866148.

Mammalian nitrilase 1 homologue Nit1 is a negative regulator in T cells

Haibing Zhang, Ying-Ju Hou, Shuang-Yin Han, Eric C. Zhang, Kay Huebner, Jianke Zhang

Int Immunol. 2009 Jun; 21(6): 691–703. Published online 2009 Apr 24. doi: 10.1093/intimm/dxp038

PMCID:: PMC2686614

Abstract Article PDF–723K

Select item 26659159.

Functional proteomic and structural insights into molecular recognition in the nitrilase family enzymes

Katherine T. Barglow, Kumar S. Saikatendu, Michael H. Bracey, Ruth Huey, Garrett M. Morris, Arthur J. Olson, Raymond C. Stevens, Benjamin F. Cravatt

Biochemistry. Author manuscript; available in PMC 2009 Dec 23.

Published in final edited form as: Biochemistry. 2008 Dec 23; 47(51): 13514–13523. doi: 10.1021/bi801786y

PMCID:: PMC2665915

Abstract Article PDF–4.4M

Select item 255627010.

Large-scale gene trapping in C57BL/6N mouse embryonic stem cells

Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin

Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108

PMCID:: PMC2556270

Abstract Article PDF–493K

Select item 52892811.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 31099212.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098013.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 28355414.

Wnk1 kinase deficiency lowers blood pressure in mice: A gene-trap screen to identify potential targets for therapeutic intervention

Brian P. Zambrowicz, Alejandro Abuin, Ramiro Ramirez-Solis, Lizabeth J. Richter, James Piggott, Hector BeltrandelRio, Eric C. Buxton, Joel Edwards, Rick A. Finch, Carl J. Friddle, Anupma Gupta, Gwenn Hansen, Yi Hu, Wenhu Huang, Crystal Jaing, Billie Wayne Key, Jr., Peter Kipp, Buckley Kohlhauff, Zhi-Qing Ma, Diane Markesich, Robert Payne, David G. Potter, Ny Qian, Joseph Shaw, Jeff Schrick, Zheng-Zheng Shi, Mary Jean Sparks, Isaac Van Sligtenhorst, Peter Vogel, Wade Walke, Nianhua Xu, Qichao Zhu, Christophe Person, Arthur T. Sands

Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24): 14109–14114. Published online 2003 Nov 10. doi: 10.1073/pnas.2336103100

Correction in:: Proc Natl Acad Sci U S A. 2004 Mar 23; 101(12): 4332.

PMCID:: PMC283554

Abstract Article PDF–481K

Select item 13924115.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 12549516.

RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse

Alexander Hüttenhofer, Martin Kiefmann, Sebastian Meier-Ewert, John O’Brien, Hans Lehrach, Jean-Pierre Bachellerie, Jürgen Brosius

EMBO J. 2001 Jun 1; 20(11): 2943–2953. doi: 10.1093/emboj/20.11.2943

PMCID:: PMC125495

Abstract Article PDF–285K

Select item 2114717.

Nitrilase and Fhit homologs are encoded as fusion proteins in Drosophila melanogaster and Caenorhabditis elegans

Yuri Pekarsky, Manuela Campiglio, Zurab Siprashvili, Teresa Druck, Yurii Sedkov, Sergei Tillib, Alexandra Draganescu, Peter Wermuth, Joel H. Rothman, Kay Huebner, Arthur M. Buchberg, Alexander Mazo, Charles Brenner, Carlo M. Croce

Proc Natl Acad Sci U S A. 1998 Jul 21; 95(15): 8744–8749. doi: 10.1073/pnas.95.15.8744

PMCID:: PMC21147

Abstract Article PDF–324K

Select item 1683318.

Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray

Tetsuya S. Tanaka, Saied A. Jaradat, Meng K. Lim, George J. Kargul, Xiaohong Wang, Marija J. Grahovac, Serafino Pantano, Yuri Sano, Yulan Piao, Ramaiah Nagaraja, Hirofumi Doi, William H. Wood, III, Kevin G. Becker, Minoru S. H. Ko

Proc Natl Acad Sci U S A. 2000 Aug 1; 97(16): 9127–9132. doi: 10.1073/pnas.97.16.9127

PMCID:: PMC16833

Abstract Article PDF–847K

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