PMC Links for GEO Profiles (Select 87607132) - PMC

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Items: 16

Select item 25429461.

The catalytic mechanism of Escherichia coli endonuclease VIII: Roles of the intercalation loop and the zinc finger

Konstantin Y. Kropachev, Dmitry O. Zharkov, Arthur P. Grollman

Biochemistry. Author manuscript; available in PMC 2008 Sep 18.

Published in final edited form as: Biochemistry. 2006 Oct 3; 45(39): 12039–12049. doi: 10.1021/bi060663e

PMCID:: PMC2542946

Article PDF–2.1M

Select item 16814812.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Article PDF–141K

Select item 13836973.

Physical and functional interactions between Escherichia coli MutY and endonuclease VIII

A-Lien Lu, Chih-Yung Lee, Lina Li, Xianghong Li

Biochem J. 2006 Jan 1; 393(Pt 1): 381–387. Prepublished online 2005 Oct 4. Published online 2005 Dec 12. doi: 10.1042/BJ20051133

PMCID:: PMC1383697

Article PDF–474K

Select item 13252004.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Article PDF–204K

Select item 13172665.

Nei Deficient Escherichia coli Are Sensitive to Chromate and Accumulate the Oxidized Guanine Lesion Spiroiminodihydantoin

M. Katie Hailer, Peter G. Slade, Brooke D. Martin, Kent D. Sugden

Chem Res Toxicol. Author manuscript; available in PMC 2005 Dec 20.

Published in final edited form as: Chem Res Toxicol. 2005 Sep; 18(9): 1378–1383. doi: 10.1021/tx0501379

PMCID:: PMC1317266

Article PDF–482K

Select item 11995626.

Structure of the uncomplexed DNA repair enzyme endonuclease VIII indicates significant interdomain flexibility

Gali Golan, Dmitry O. Zharkov, Hadar Feinberg, Andrea S. Fernandes, Elena I. Zaika, Jadwiga H. Kycia, Arthur P. Grollman, Gil Shoham

Nucleic Acids Res. 2005; 33(15): 5006–5016. Published online 2005 Sep 6. doi: 10.1093/nar/gki796

PMCID:: PMC1199562

Article PDF–948K

Select item 11451937.

Excision of formamidopyrimidine lesions by endonucleases III and VIII is not a major DNA repair pathway in Escherichia coli

Carissa J. Wiederholt, Jennifer N. Patro, Yu Lin Jiang, Kazuhiro Haraguchi, Marc M. Greenberg

Nucleic Acids Res. 2005; 33(10): 3331–3338. Published online 2005 Jun 8. doi: 10.1093/nar/gki655

PMCID:: PMC1145193

Article PDF–159K

Select item 3732998.

Stereoselective excision of thymine glycol from oxidatively damaged DNA

Holly Miller, Andrea S. Fernandes, Elena Zaika, Monica M. McTigue, M. Cecilia Torres, Maryann Wente, Charles R. Iden, Arthur P. Grollman

Nucleic Acids Res. 2004; 32(1): 338–345. Published online 2004 Jan 15. doi: 10.1093/nar/gkh190

PMCID:: PMC373299

Article PDF–172K

Select item 1791789.

Characterization of endonuclease III (nth) and endonuclease VIII (nei) mutants of Escherichia coli K-12.

Y Saito, F Uraki, S Nakajima, A Asaeda, K Ono, K Kubo, K Yamamoto

J Bacteriol. 1997 Jun; 179(11): 3783–3785. doi: 10.1128/jb.179.11.3783-3785.1997

PMCID:: PMC179178

Summary PDF–136K

Select item 17917710.

Escherichia coli endonuclease VIII: cloning, sequencing, and overexpression of the nei structural gene and characterization of nei and nei nth mutants.

D Jiang, Z Hatahet, J O Blaisdell, R J Melamede, S S Wallace

J Bacteriol. 1997 Jun; 179(11): 3773–3782. doi: 10.1128/jb.179.11.3773-3782.1997

PMCID:: PMC179177

Summary PDF–976K

Select item 14734811.

Multiply damaged sites in DNA: interactions with Escherichia coli endonucleases III and VIII.

L Harrison, Z Hatahet, A A Purmal, S S Wallace

Nucleic Acids Res. 1998 Feb 15; 26(4): 932–941. doi: 10.1093/nar/26.4.932

PMCID:: PMC147348

Summary PDF–343K

Select item 13717612.

Novel repair activities of AlkA (3-methyladenine DNA glycosylase II) and endonuclease VIII for xanthine and oxanine, guanine lesions induced by nitric oxide and nitrous acid

Hiroaki Terato, Aya Masaoka, Kenjiro Asagoshi, Akiko Honsho, Yoshihiko Ohyama, Toshinori Suzuki, Masaki Yamada, Keisuke Makino, Kazuo Yamamoto, Hiroshi Ide

Nucleic Acids Res. 2002 Nov 15; 30(22): 4975–4984. doi: 10.1093/nar/gkf630

PMCID:: PMC137176

Article PDF–218K

Select item 12534913.

Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate

Dmitry O. Zharkov, Gali Golan, Rotem Gilboa, Andrea S. Fernandes, Sue Ellen Gerchman, Jadwiga H. Kycia, Robert A. Rieger, Arthur P. Grollman, Gil Shoham

EMBO J. 2002 Feb 15; 21(4): 789–800. doi: 10.1093/emboj/21.4.789