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Items: 1 to 20 of 24

1.
Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery
Pierre C. Havugimana, Raghuveera Kumar Goel, Sadhna Phanse, Ahmed Youssef, Dzmitry Padhorny, Sergei Kotelnikov, Dima Kozakov, Andrew Emili
Nat Commun. 2022; 13: 4043. Published online 2022 Jul 13. doi: 10.1038/s41467-022-31809-z
PMCID:
PMC9279285
AbstractArticlePDF–2.5M
2.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
3.
A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
Nature. Author manuscript; available in PMC 2020 Oct 8.
Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x
PMCID:
PMC7169983
AbstractArticlePDF–5.4M
4.
Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRASG13D
Susan A. Kennedy, Mohamed-Ali Jarboui, Sriganesh Srihari, Cinzia Raso, Kenneth Bryan, Layal Dernayka, Theodosia Charitou, Manuel Bernal-Llinares, Carlos Herrera-Montavez, Aleksandar Krstic, David Matallanas, Max Kotlyar, Igor Jurisica, Jasna Curak, Victoria Wong, Igor Stagljar, Thierry LeBihan, Lisa Imrie, Priyanka Pillai, Miriam A. Lynn, Erik Fasterius, Cristina Al-Khalili Szigyarto, James Breen, Christina Kiel, Luis Serrano, Nora Rauch, Oleksii Rukhlenko, Boris N. Kholodenko, Luis F. Iglesias-Martinez, Colm J. Ryan, Ruth Pilkington, Patrizia Cammareri, Owen Sansom, Steven Shave, Manfred Auer, Nicola Horn, Franziska Klose, Marius Ueffing, Karsten Boldt, David J. Lynn, Walter Kolch
Nat Commun. 2020; 11: 499. Published online 2020 Jan 24. doi: 10.1038/s41467-019-14224-9
PMCID:
PMC6981206
AbstractArticlePDF–3.7M
5.
Collagen IX gene polymorphisms and lumbar disc degeneration: a systematic review and meta-analysis
Huihong Wu, Siting Wang, Weiyou Chen, Xinli Zhan, Zengming Xiao, Hua Jiang, Qingjun Wei
J Orthop Surg Res. 2018; 13: 47. Published online 2018 Mar 5. doi: 10.1186/s13018-018-0750-0
PMCID:
PMC5838857
AbstractArticlePDF–874K
6.
Structural insight for chain selection and stagger control in collagen
Sergei P. Boudko, Hans Peter Bächinger
Sci Rep. 2016; 6: 37831. Published online 2016 Nov 29. doi: 10.1038/srep37831
PMCID:
PMC5126661
AbstractArticlePDF–1.4M
7.
Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver
Alexandra Naba, Karl R Clauser, Charles A Whittaker, Steven A Carr, Kenneth K Tanabe, Richard O Hynes
BMC Cancer. 2014; 14: 518. Published online 2014 Jul 18. doi: 10.1186/1471-2407-14-518
PMCID:
PMC4223627
AbstractArticlePDF–1.5M
8.
Prohibitin Regulates TGF-β Induced Apoptosis as a Downstream Effector of Smad-dependent and -independent Signaling
Brian Zhu, Jianjun Zhai, Haining Zhu, Natasha Kyprianou
Prostate. Author manuscript; available in PMC 2013 Sep 4.
Published in final edited form as: Prostate. 2010 Jan 1; 70(1): 17–26. doi: 10.1002/pros.21033
PMCID:
PMC3762596
AbstractArticlePDF–1.9M
9.
Type IX collagen gene mutations can result in multiple epiphyseal dysplasia that is associated with osteochondritis dissecans and a mild myopathy
Gail C Jackson, Dominique Marcus-Soekarman, Irene Stolte-Dijkstra, Aad Verrips, Jacqueline A Taylor, Michael D Briggs
Am J Med Genet A. 2010 Apr; 152A(4): 863–869. Published online 2012 Mar 26. doi: 10.1002/ajmg.a.33240
PMCID:
PMC3557369
AbstractArticlePDF–202K
10.
The NC2 Domain of Type IX Collagen Determines the Chain Register of the Triple Helix
Sergei P. Boudko, Hans Peter Bächinger
J Biol Chem. 2012 Dec 28; 287(53): 44536–44545. Published online 2012 Nov 6. doi: 10.1074/jbc.M112.417543
PMCID:
PMC3531767
AbstractArticlePDF–1.4M
11.
Intervertebral disc degeneration in relation to the COL9A3 and the IL-1ß gene polymorphisms
Svetlana Solovieva, Jaana Lohiniva, Päivi Leino-Arjas, Raili Raininko, Katariina Luoma, Leena Ala-Kokko, Hilkka Riihimäki
Eur Spine J. 2006 May; 15(5): 613–619. Published online 2005 Aug 17. doi: 10.1007/s00586-005-0988-1
PMCID:
PMC3489335
AbstractArticlePDF–210K
12.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
13.
Type IX Collagen Neo-Deposition in Degenerative Discs of Surgical Patients Whether Genotyped Plus or Minus for COL9 Risk Alleles
Yong Zhu, Jiann-Jiu Wu, Mary Ann Weis, Sohail K. Mirza, David R. Eyre
Spine (Phila Pa 1976) Author manuscript; available in PMC 2012 Nov 15.
Published in final edited form as: Spine (Phila Pa 1976). 2011 Nov 15; 36(24): 2031–2038. doi: 10.1097/BRS.0b013e3181ffdd61
PMCID:
PMC3137765
AbstractArticlePDF–1.0M
14.
Variation at the NFATC2 Locus Increases the Risk of Thiazolidinedione-Induced Edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) Study
Swneke D. Bailey, Changchun Xie, Ron Do, Alexandre Montpetit, Rafael Diaz, Viswanathan Mohan, Bernard Keavney, Salim Yusuf, Hertzel C. Gerstein, James C. Engert, Sonia Anand, on behalf of the DREAM investigators
Diabetes Care. 2010 Oct; 33(10): 2250–2253. Published online 2010 Jul 13. doi: 10.2337/dc10-0452
PMCID:
PMC2945168
AbstractArticlePDF–153K
15.
Gene-centric Association Signals for Lipids and Apolipoproteins Identified via the HumanCVD BeadChip
Philippa J. Talmud, Fotios Drenos, Sonia Shah, Tina Shah, Jutta Palmen, Claudio Verzilli, Tom R. Gaunt, Jacky Pallas, Ruth Lovering, Kawah Li, Juan Pablo Casas, Reecha Sofat, Meena Kumari, Santiago Rodriguez, Toby Johnson, Stephen J. Newhouse, Anna Dominiczak, Nilesh J. Samani, Mark Caulfield, Peter Sever, Alice Stanton, Denis C. Shields, on behalf of the ASCOT investigators, Sandosh Padmanabhan, Olle Melander, Claire Hastie, Christian Delles, on behalf of the NORDIL investigators, Shah Ebrahim, Michael G. Marmot, George Davey Smith, Debbie A. Lawlor, Patricia B. Munroe, for the BRIGHT Consortium, Ian N. Day, Mika Kivimaki, John Whittaker, Steve E. Humphries, Aroon D. Hingorani
Am J Hum Genet. 2009 Nov 13; 85(5): 628–642. doi: 10.1016/j.ajhg.2009.10.014
PMCID:
PMC2775832
AbstractArticlePDF–2.8M
16.
Absence of the mutated Trp2 allele but a common polymorphism of the COL9A2 collagen gene is associated with early recurrence after lumbar discectomy in a German population
Markus Knoeringer, Andreas Reinke, Anna-Elisabeth Trappe, Juergen Schlegel
Eur Spine J. 2008 Mar; 17(3): 463–467. Published online 2007 Dec 14. doi: 10.1007/s00586-007-0548-y
PMCID:
PMC2270378
AbstractArticlePDF–215K
17.
The alpha2 type IX collagen tryptophan polymorphism is associated with the severity of disc degeneration in younger patients with herniated nucleus pulposus of the lumbar spine
K. Higashino, Y. Matsui, S. Yagi, Y. Takata, T. Goto, T. Sakai, S. Katoh, N. Yasui
Int Orthop. 2007 Feb; 31(1): 107–111. Published online 2006 Apr 4. doi: 10.1007/s00264-006-0117-8
PMCID:
PMC2267527
AbstractArticlePDF–122K
18.
Genetic Mapping of a Locus for Multiple Epiphyseal Dysplasia (EDM2) to a Region of Chromosome 1 Containing a Type IX Collagen Gene
Michael D. Briggs, HiChang Choi, Matthew L. Warman, John A. Loughlin, Paul Wordsworth, Bryan C. Sykes, Catherine M. M. Irven, Michael Smith, Ruth Wynne-Davies, Mark H. Lipson, Leslie G. Biesecker, Ann P. Garber, Ralph Lachman, Bjorn R. Olsen, David L. Rimoin, Daniel H. Cohn
Am J Hum Genet. 1994 Oct; 55(4): 678–684.
PMCID:
PMC1918298
SummaryPage BrowsePDF–1.0M
19.
Identification of novel pro-alpha2(IX) collagen gene mutations in two families with distinctive oligo-epiphyseal forms of multiple epiphyseal dysplasia.
P Holden, E G Canty, G R Mortier, B Zabel, J Spranger, A Carr, M E Grant, J A Loughlin, M D Briggs
Am J Hum Genet. 1999 Jul; 65(1): 31–38. doi: 10.1086/302440
PMCID:
PMC1378072
SummaryPDF–675K
20.
A Mutation in COL9A1 Causes Multiple Epiphyseal Dysplasia: Further Evidence for Locus Heterogeneity
Malwina Czarny-Ratajczak, Jaana Lohiniva, Piotr Rogala, Kazimierz Kozlowski, Merja Perälä, Liisa Carter, Tim D. Spector, Lukasz Kolodziej, Ulpu Seppänen, Renata Glazar, Jan Królewski, Anna Latos-Bielenska, Leena Ala-Kokko
Am J Hum Genet. 2001 Nov; 69(5): 969–980. Published online 2001 Sep 14. doi: 10.1086/324023
PMCID:
PMC1274373
AbstractArticlePDF–427K

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